Gene detail

Gene detail information of Glyur002666s00040270

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G77120.1	2.00E-115	alcohol dehydrogenase 1
NR	XP_003602129.1	2.15E-178	Alcohol dehydrogenase [Medicago truncatula]
COG	NP_967848.1	5.00E-89	alcohol dehydrogenase / formaldehyde dehydrogenase [Bdellovibrio bacteriovorus HD100]
Swissprot	tr\|P12886\|ADH1_PEA	5.00E-180	Alcohol dehydrogenase 1
trEMBL	tr\|G7J5M6\|G7J5M6_MEDTR	8.00E-179	Zinc-binding alcohol dehydrogenase family protein {ECO:0000313\|EMBL:AES72380.1}

Sequence

Transcript Sequence

>Glyur002666s00040270.1
NNTTCACAGGGGAATGCGGGGAATGCCCGCATTGTAAGTCAGAGGAGAGCAACATGTGTGATCTTCTCAGGATCAACACTGATCGCGTCGTCATGCTCAATGACGGCCAATCAAGATTCTCTATAAAGGGAAAACCCATACACCATTTTGTTGGCACCTCTACATTCAGTGAGTACACTGTGGTCCATGCTGGATGNGTTGCAAAGATCAACCCTGCTGCCCCACTTGACAAAGTTTGTATTCTCAGNTGTGGAATATGCACAGGTCTTGGTGCTACTGTCAACGTTGCAAAACCGAAACCGGGTTCTTCTGTTGCTGTCTTTGGACTTGGAGCTGTTGGCCTTGCTGCTGCTGAAGGGGCAAGGATTTCTGGTGCATCAAGAATCATTGGGGTTGATTTAGTTTCCAGCCGATTTGAATTAGCTAAGAAGTTTGGGGTCAATGAGTTTGTGAACCCGAAAGATCATGACAAACCTGTGCAAGAGGTTATTGCTGAAATGACCAATGGAGGTGTGGACCGTGCTGTTGAATGTACTGGCAGCATCCAGGCCATGATATCTGCATTCGAATGTGTCCACGATGGATGGGGTGTTGCTGTACTTGTTGGAGTGCCAAGCAAAGATGATGCATTCAAAACTCATCCTATGAATTTCTTGAATGAGAGGACACTAAAGGGTACCTTCTACGGTAACTACAAACCTCGCACTGATCTTCCTGTTGTTGAGCTGGAGCTGGAGAAATTCATCACTCACACAATCCCATTCTCAGAGATTAACAAAGCTTTTGATTACATGCTGAAAGGGGAGTCCATCAGATGTATCATACGCATGGAGGAGTAAAACCGTTAAAATGGTGATGACATAGTCCCTATTGGGTGTTGCACTTCTCTCGTTGTGAAAAATAAATAAATTTTATGTGTAATAATCCCCTTTAGGATTATTGAATTTGTGAGAATTTTGTGANGTTTGAATGTAGAGAGTGGAAAGGCCTATGCTACTGGGATTGTCTAATAGTAGTATAAGATAATAAGTATTAGTAAGATGTTGATTTTGTTAATTTTTTTGTTGTTGTGGCATTTTATTATTTGTAGTGATTTTTTTTTTCCTTGGTGAAGGAATGGGGCAAACACTCCAAACAAAAACACTAAGAAGCAACTATACTACCCTTAAAAGACAATAGATATTGTGAATACCCAATTTCATTTAAAGATATTATTTAAAGGCACTTACGTTCTAGTGTAATTACCAAACTCGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02666	31636	33937	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K18857	ADH1	EC:1.1.1.1	Glycolysis / Gluconeogenesis	map00010
			Fatty acid degradation	map00071
			alpha-Linolenic acid metabolism	map00592
			Tyrosine metabolism	map00350

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0008270 zinc ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002666s00040270.1	PF00107.21	ADH_zinc_N	94	218	2.10E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	115.525
SRR1783600	control	116.849
SRR1783602	moderate drought stress	47.631
SRR1811619	moderate drought stress	46.382

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	155.869
DRR006520	Root Summer glycyrrhizin high producing strain	155.842
DRR006521	Root Winter glycyrrhizin high producing strain	721.327
DRR006522	Root Winter glycyrrhizin high producing strain	693.731
DRR006523	Root Summer glycyrrhizin low producing strain	393.385
DRR006524	Root Summer glycyrrhizin low producing strain	393.320
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.103
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.989

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	134.522
SRR2868004	Drought Stress (root)	128.949
SRR2967015	Control (root)	147.672

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.707
SRR9715740	Leaf	31.828
SRR9715741	Leaf	40.146
SRR9715739	Root	363.181
SRR9715742	Root	174.749
SRR9715743	Root	213.688

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1245.053
SRR8749028	MeJA induced 9h	1290.206
SRR8749029	MeJA induced 9h	2444.351
SRR8749030	Uninduced	1741.198
SRR8749031	Uninduced	3648.185
SRR8749032	Uninduced	3855.098

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	293.805
SRR8400027	Control - Root	255.688