Gene detail

Gene detail information of Glyur002665s00038740.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13710.2	7.00E-145	sterol methyltransferase 1
NR	XP_007131415.1	0	hypothetical protein PHAVU_011G011800g [Phaseolus vulgaris]
COG	YP_001277818.1	3.00E-27	type 11 methyltransferase [Roseiflexus sp. RS-1]
Swissprot	tr\|Q9LM02\|SMT1_ARATH	0	Cycloartenol-C-24-methyltransferase
trEMBL	tr\|V7AD53\|V7AD53_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW03409.1}

Sequence

Transcript Sequence

>Glyur002665s00038740.1
TTAAAAGGAAAACAACCGCAGTCCCTGTCCCTACTCTCTCCTCTTCAGCTCCGAAGAGATTCCCCTTTCCCTGGTTGTGTTCTCAGACACCCTTCTTTCGATATCTTATAGCAAGTTCCTTGTGAGTTCTGTGAGAGGTATCAGAAGCTACCACGATGAATTTGGCGTCGGGTGTCGGTGGAAAGATTGACAAATCCGAAGTTCTGTCTGCTGTTGAGAAGTATGAGAAGTATCATGTTTATTATGGAGGTAAAGAGGAAGAGAGGAAAGCTAATTACTCTGATATGGTTAATAAATATTATGATCTTTCTACCAGCTTTTATGAGTTTGGCTGGGGACAATCTTTCCATTTTGCACCCAGATGGAAAGGGGAATCTCTTGGAGAGAGCCTCAAAAGACATGAGCACTTCCTTTCTTTACAACTTGGCCTGAAGCCTGGACAGAAGGTTTTGGATGTCGGATGTGGAATCGGGGGGCCACTAAGAGAAATTTCTCGATTCAGCTTGACATCAATCACAGGGTTGAACAACAATGAGTACCAGATAGCAAGAGGAAAGGAACTCAATCGCATCACTGGAGTGGACAAGACTTGCGACTTTGTCAAGGCTGACTTTATGAACATGCCATTCCCGGACGATAGTTTTGATGCAGTGTATGCAATTGAAGCCACCTGCCACGCACCAGATGCTCATGGATGCTACAAAGAGATTTTGAGAGTGTTGAAGCCTGGCCAACTTTTTGCTGCATATGAATGGTGCATGACTGATGCTTTTGATCCCAATAATAAAGAACACCAAAAAATAAAGGCAGAAATTGAGATTGGCAATGGACTTCCGGACGTTAGATNGACCACNAAGTGTCTTGAAGCTCTGAAGGAAGCAGGTTTTGAGGTCAAGGTTCTGGAATATGTTGGACTGGCTCCAGAGGGAAGTCAAAGGGTTCAACTTTTCCTAGAGAAGGCTGCAGAGGGACTGGTTGATGGTGGAAAGAAAGAGATTTTCACACCAATGTACTTCTTCTTGGCACGGAAACCTGATTCAGCCAGTCACTAAGGTGGTCTTGCAAATTGCTGCAGCATGTGTTTGGTTATTTCAGTTCTCGTGTCCTGGGGCANGTTGAAGCAAAAGCTACTCTCCGCAGCTTCGACATGGACGCGCGGTAGAAGGTTTTTCACTGCAGAAACAAACACGCTAGCAGGATTCAATATTTATTGCGATTCAAGGAGGGGTTTCTTTTTTCTTCTTGTAATATTTGTTCTTTGGCCTTGCCAAAAAAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02665	19086	23833	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00559	E2.1.1.41, SMT1, ERG6	EC:2.1.1.41	Steroid biosynthesis	map00100

Gene Ontology

biological_process

GO:0006694 steroid biosynthetic process

GO:0008152 metabolic process

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002665s00038740.1	PF08241.7	Methyltransf_11	99	195	7.80E-20
Glyur002665s00038740.1	PF08498.5	Sterol_MT_C	246	293	2.40E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.029
SRR1783600	control	8.178
SRR1783602	moderate drought stress	8.046
SRR1811619	moderate drought stress	8.135

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.410
DRR006520	Root Summer glycyrrhizin high producing strain	26.607
DRR006521	Root Winter glycyrrhizin high producing strain	3.724
DRR006522	Root Winter glycyrrhizin high producing strain	3.876
DRR006523	Root Summer glycyrrhizin low producing strain	13.883
DRR006524	Root Summer glycyrrhizin low producing strain	14.022
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.905
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.104

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.875
SRR2868004	Drought Stress (root)	24.091
SRR2967015	Control (root)	21.352

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.766
SRR9715740	Leaf	1.807
SRR9715741	Leaf	2.757
SRR9715739	Root	11.695
SRR9715742	Root	15.790
SRR9715743	Root	13.799

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.288
SRR8749028	MeJA induced 9h	6.939
SRR8749029	MeJA induced 9h	11.684
SRR8749030	Uninduced	1.609
SRR8749031	Uninduced	0.683
SRR8749032	Uninduced	2.132

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.970
SRR8400027	Control - Root	29.178