Gene detail

Gene detail information of Glyur002664s00046080.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G43880.1	1.00E-99	Pectin lyase-like superfamily protein
NR	XP_004488265.1	0	PREDICTED: polygalacturonase-like [Cicer arietinum]
COG	YP_003391696.1	3.00E-16	glycoside hydrolase family 28 [Spirosoma linguale DSM 74]
Swissprot	tr\|P48979\|PGLR_PRUPE	2.00E-107	Polygalacturonase (Precursor)
trEMBL	tr\|G7IIV0\|G7IIV0_MEDTR	2.00E-180	Pectin lyase superfamily protein {ECO:0000313\|EMBL:AES65814.1}

Sequence

Transcript Sequence

>Glyur002664s00046080.1
ATGGTTCATCACTTCATCTTTCTCTTTCTAGCCACCTTATGCAATATCCTCTTTGAAACCACCAATGCAGCAGCCTCTATCAATGTGGTTAGCTTTGGGGCTAAACCCGATGTCAATTTCGACTCAACAACACCCTTTCTCAGGGCGTGGAATTCAGCATGCAAATCATCATCAAGTGGAGGCGCGGCCACAACGATTCACGTGCCCCGAGGAAGTTTCTTATTGAAACAAGTGACGTTTTGGGGTCCTTGCAAGAACAAGATTGATTTCAGAATTGATGGCACCATAGTTGCCCCTTCGGATTACTGGTCACTGGGTAATTCTGGATATTGGATCTTGTTCATGAAGGTTAATGGGCTTTCAATTTATGGAGGGACTCTTGACGCAAAGGGTGCTGGCTATTGGCTGCAGTCTGTATCGTTCAGTTGGTCCAACAATGTGGTGGTTAGTGGATTAACATCATTNAACAGCCAGAGAACTCACATTGCCGTGGACCATTGCAAAAATGTTCTGATCCGAGATGTGAAAATCAGAGCCCCCAGTAGGAGCCCCAACACAGATGGAGTCAACGTGCAATTTTCAACGGGAGTTACTATTAGCCATGCCACCATAATGACTGGTGATGATTGCATATCCATAAGCCAAGGTACTACTAATATGTGGATTGAGCTGTTCACCAAAACAGGAAATGGGNTTAGAATAAAATCGTGGGCACAACCAAGCAATGGATATGCAAGAGACATTGTGTTCAGGAACCTCATCATGCAAAATGCCTACAATCCCATCATTATTGATCAAAGATATTGCCCCGGTAAAGAAAGGGAGTGTCCTCACCAGAATTCTGGTGTGAAGATAAGCAGAGTATCATATGAACACATAAAGGGAACTTCAGCAAGCCCTGTAGCTATCAATTTTGATTGCAGCCAAAGTAACCCATGTTGGGGAATCAAACTGGAAGACATAAAACTCACTTATTCTAAAGGGTCTGAAACATCATCTTGTAGAAATGTTGGAGGAAGTAGCAGCGGAGTGGTCATCCCCAGGAGTTGTCTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02664	7774	13480	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH28

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01184	E3.2.1.15	EC:3.2.1.15	Pentose and glucuronate interconversions	map00040

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004650 polygalacturonase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002664s00046080.1	PF00295.12	Glyco_hydro_28	61	223	2.20E-36
Glyur002664s00046080.1	PF00295.12	Glyco_hydro_28	226	338	9.30E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.016
SRR1783600	control	0.034
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.175
SRR2868004	Drought Stress (root)	1.689
SRR2967015	Control (root)	1.221

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.059
SRR8400027	Control - Root	0.043