Gene detail

Gene detail information of Glyur002662s00040188.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G48940.1	1.00E-178	Leucine-rich repeat transmembrane protein kinase family protein
NR	XP_004502597.1	0	PREDICTED: LRR receptor-like serine/threonine-protein kinase RCH1-like [Cicer arietinum]
COG	YP_004775215.1	2.00E-50	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGV1\|RCH1_ARATH	0	LRR receptor-like serine/threonine-protein kinase RCH1 (Precursor)
trEMBL	tr\|I1JYW5\|I1JYW5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G41860.1}

Sequence

Transcript Sequence

>Glyur002662s00040188.1
ATGTCAAGTGTGATTCCAAGTTCAGTGGGAAACTTGTCCTCTCTTGTTACACTTTTTTTTAGCTTCAACACTTTATCAGGAACCATTCCGGAGGAAATCGGAAAGCTGTACAATCTGCGGTGGCTATCGTTGAATTCGAATTCCTTACATGGTGGGATTCCAACCACAATTTTTTTCTGTTCAAGGCTTCAGCAGCTGGCACTGTTTGACAACCAGCTCTCTGGTATGATTCCTGGAGAAATAGGCCAATTGAAGGCTCTTGAAACATTAAGAGCAGGTGGGAATCCGGGTATTCACGGCGAGATTCCAATGCAGATATCAGAGTGCAAGGCTTTGGTTATTCTTTTTTTTGCAGTTACTGGGATCTCTGGGGGGATTCCACCAAGTATAGGNGAACTTCAGAATCTAAAGACACTTTCTGTCTACACAGCACATCTCACAGGTCACATCCCACCAGAGATTCACAACTGCTCAGCCTTGGAAGATTTGTTTCTATATGAAAACCAGCTTTCTGGGAATATCCCTTATGAATTGGGTTCCATGCAAAGCCTCAGGAGGGTGTTGCTGTGGCAGAACAATTTGACTGGGACCATTCCAGAGAGTTTGGGAAACTGCACAAATCTTAAGGTTATAGATTTCTCTTTGAATTCTCTGGGTGGTCAGCTACCTGTGACTCTTAGTAGTCTTCTCTTTTTTTTGGAGTTTCTTTTGTCTGATAATAACATTGATGGAGAGATACCTTCATATATTTTTTTTTTCTCAAGGCTGAAGCAACTTGAATTGGATAACAACAGATTCTCTGGTGAGATTCCACCTGTGATGGGGCAACTGAAGGAACTTACCCTCTTTTTTGCCTGGCAGAATCAACTCNATGGGAGTATACCAACAGAACTATCCAACTGTGAGAAGCTTGAAGCGGCTTTCAGGTCAGATTCCACCGGATATTGTTTTTTTCACCAGCTTGATCAGGTTACGGCTGGGATCNAACAACTTCACCGAATAACTGGAAGCATTCCTGAGAGTTTGGGATTTTTTTCATCTTTGAATAAGTTGACTCTAAGTGGAAACCTTATCACTGGTTTGATCCCTCAGTCACTTGGACTTTGCAAGGATTTGCAGTTGCTGGATTTAAGTGACAATAGGATTTTTTTTTCCATTCCCAATGAGATTGGTCACTTGCAAGGATTGGATATCCTCTTGAACTTGAGTTGGAATTCACTTACTGGCCCCATTCCAGAAACCTTCTCAAATCTCTCCAAAATTTCCACCTTGGACCTCTCTCACAACAAGCTCACAGGTACCCTTGGAGTACTGGAAAATTTTTTTAATCTTGTGTCTCTAAATGTCTCCTACAACAGCTTTTCCGGTACCCTTCCCGACACAAAGTTCTTCCGGGATCTACCTGCTGCTGCATTTGCTGGTAACCCTGAGCTTTTTTTTTTCAAGTGTCATGCAAGTGGAAATCGCGAAGGCGTCAAGTCAATGAGAAACATTATTGTCTACACTTTCCTTGGGGTTATTTTGACTTCGATTATTGTCACTTGTGGAGTGTTTTTTTCCCTCAGGATTCAAGGGGACAATTGTGGGAGGAATTTCGAGGAAGGTGAAATTTTTTTGGCTTTCACTCCATTCCAAAAGCTTAACTTCTCCATCAATGACATCGTCACTTTTTTTTCGGATTCGAACATCGTGGGAAAGGGTTGTTCGGGCGTTGTTTACCGAGTATTTTTTTCTGCGAAACAGGTCATTGCAGTGAAGAAGCTATGGCCTATAAAGAATGAAGTTTTTTTAGAGAGAGATCTATTCACAGCAGAAGTTCAGACCCTTGGATCAATAAGGCATAAAAACATAGTAAGACTTTTAGGATGCTGTGACAATGGAAGAACCAGATTGCTCTTGTTTGATTATATATGTAATGGGAGTTTGTTTGGATTGCTCCATGAGAAGAGATTGTTCTTGGATTGGGATGCAAGGTATAAGATCATACTTGGAGCAGCTCATGGTTTAGAATATCTTTTTTTTGATTGTATCCCTCCAATTGTCCATAGAGACATTAAGGCTAACAACATCTTGGTAGGTCCACAGTTTGAGGCTTTCCTTGCAGATTTTGGCCTTGCAAAACTCATTAGTTCCTCGAATTGTTCAGGAGCCTCTAATGTAGTTGCAGATTTTTTTTACAGTTTAAGGATCACAGAGAAGAGTGATGTGTACAGTTACGGTGTTGTGCTACTTGAGGTCTTAACGGGGATGGAGCCAACTGATAACAGGATTCCAGAGGGTGCACACATTGTCACCTGGGTTACCAGTGAGATCAGAGAGAAGAGAAGGGAATTCACATCCATTTTTTTTCAGCAACTAGTGTTGCAGTGTGGAACAAGGACACCTGAGATGCTTCAAGTGCTCGGCGTGGCTCTCCTATGTGTGAATCCATCCCCGGAGGAACGGCCCGCAATGAAAGTTTTTTTAGCAATGCTCAAGGAGATCAGGCACGAAACCGATGATTTCGAGAAGCCGAATCTTCTCCACAAAGGCATGGTTACTAATCCAAAAGCATCAGTTCACTGTTCTAGTTTCTTTTTTTCATGTGAACCTTTGATAGAATCATCATCTTCTTCTTCATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02662	25505	29149	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002662s00040188.1	PF13516.1	LRR_6	205	227	1.5
Glyur002662s00040188.1	PF00560.28	LRR_1	372	393	0.18
Glyur002662s00040188.1	PF13516.1	LRR_6	418	433	0.89
Glyur002662s00040188.1	PF00069.20	Pkinase	561	795	3.90E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.339
SRR1783600	control	6.448
SRR1783602	moderate drought stress	3.745
SRR1811619	moderate drought stress	3.510

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.194
DRR006520	Root Summer glycyrrhizin high producing strain	0.157
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.082
DRR006524	Root Summer glycyrrhizin low producing strain	0.123
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.290
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.273

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.366
SRR2868004	Drought Stress (root)	1.580
SRR2967015	Control (root)	1.274

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.728
SRR9715740	Leaf	1.797
SRR9715741	Leaf	1.820
SRR9715739	Root	2.584
SRR9715742	Root	2.397
SRR9715743	Root	1.957

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.001
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.037
SRR8400027	Control - Root	14.278