Gene detail information of Glyur002662s00040186 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G21350.3 | 1.00E-72 | Thioredoxin superfamily protein |
| NR | XP_003526682.1 | 2.23E-101 | PREDICTED: uncharacterized protein LOC100806693 [Glycine max] |
| COG | YP_005072597.1 | 8.00E-58 | hypothetical protein [Arthrospira platensis NIES-39] |
| trEMBL | tr|I1KAL3|I1KAL3_SOYBN | 8.00E-102 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G12930.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02662 | 15853 | 20586 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002662s00040186.1 | PF00578.16 | AhpC-TSA | 2 | 90 | 2.30E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.072 |
| SRR1783600 | control | 18.781 |
| SRR1783602 | moderate drought stress | 16.083 |
| SRR1811619 | moderate drought stress | 16.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.983 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.011 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.743 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.075 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.409 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.296 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 61.699 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 59.870 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.805 |
| SRR2868004 | Drought Stress (root) | 10.453 |
| SRR2967015 | Control (root) | 6.388 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 39.724 |
| SRR9715740 | Leaf | 30.517 |
| SRR9715741 | Leaf | 40.680 |
| SRR9715739 | Root | 2.967 |
| SRR9715742 | Root | 4.568 |
| SRR9715743 | Root | 3.474 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 22.428 |
| SRR8749028 | MeJA induced 9h | 16.757 |
| SRR8749029 | MeJA induced 9h | 16.489 |
| SRR8749030 | Uninduced | 9.419 |
| SRR8749031 | Uninduced | 2.907 |
| SRR8749032 | Uninduced | 6.681 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.058 |
| SRR8400027 | Control - Root | 13.399 |