Gene detail

Gene detail information of Glyur002655s00040013.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G14410.1	5.00E-87	ssDNA-binding transcriptional regulator
NR	AFK42652.1	6.33E-141	unknown [Lotus japonicus]
Swissprot	tr\|Q9M9S3\|WHY1_ARATH	3.00E-109	Single-stranded DNA-binding protein WHY1, chloroplastic (Precursor)
trEMBL	tr\|I3SQW0\|I3SQW0_LOTJA	2.00E-141	Uncharacterized protein {ECO:0000313\|EMBL:AFK42652.1}

Sequence

Transcript Sequence

>Glyur002655s00040013.1
AGCAAATACAGGCATTTGGATTTGGCACTTTTATCACCCGTTACTTTACTTCTTGTGTTGACGGTNAGACCAAACCAAAAGGCAATTTTCGTATCAAAGACAGAAGCAGAGAGGTGAATAACGATGTTGCATTTGCAGNTGCAGCTACACTCGCCACCATCAGTATTCTTATCTTCTTCTTCATCTTCTTCCCGTAAGCTTTTCTTAAACCACTCTTTCTCTCCAAAGTCTCTTCCTTCCAAACCCCTCACACAACCAATCACATGCCGCTACTCACAAGACCTCTTCGACCACAACAAAACCACCGCCTCCACACCAAACCCCTCAAACCCCAACGCTTCAGTTGGAGCATTGCCACCTAGGGTTTATGTGGGTCACTCCATTTACAAAGGGAAGTCTGCACTCACAGTGACTCCTAGACCCCCAGAATTTGCGCCACTCGATTCAGGGGCATTCAAGATATCTAGGGAGGGTTATGTGCTGCTTCAGTTTGCGCCTGCCATTGCTTCGCGCCAATATGATTGGACTAGAAAGCAGGTGTTCTCGTTATCAGTGGGTGAAATGGGAAATGTGATTAGCCTTGGTGCAAGGGAGTCTTGTGAATTTTTTCATGATCCTTTGAAGGGAAAAAGTGATGAAGGTAAAGTCAGAAAAGTTTTGAAGTTGGAGCCTTTTCCAGATGGTTCTGGTCACTTCTTTAACCTCGGTGTTCAAAACAAGATTGTGAACATTGATGAAAGCATCAGTATCCCTGTGACAAAAGCAGAGTTTGCAGTTTTGAGATCAATTTTCAATTTTATCATGCCATACCTTCTAGGTTGGCATACCTTTGCAAACTCCATAAATCCGGAGTATTCCAGTGTAGTGAACAATGCCAGCCCAAGATACGGAGGAGACTATGAATGGAACAGATAGGGATATCACTTTTTTGCTTGTACTGCACAGCACTCACCCTTTGTGANCTTCTCAACTTTGCAAAATGTGTTGAATCACTTCATCCTAATTAGCTTAGTTGTTTTAGAGATTTTGACTTTTGAGATAGTGAATGTCATTACTTAGAACACTCGTTGTGTTACTTATTCCTTGTTTCTTTCGGATTCTGTATTTGGTGCATCTTATGATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02655	23237	26557	-

Gene family

Gene family	subfamily
Transcription Factors Family	Whirly

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002655s00040013.1	PF08536.6	Whirly	86	224	5.40E-62

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	42.250
SRR1783600	control	42.029
SRR1783602	moderate drought stress	28.318
SRR1811619	moderate drought stress	27.824

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	45.662
DRR006520	Root Summer glycyrrhizin high producing strain	44.478
DRR006521	Root Winter glycyrrhizin high producing strain	18.909
DRR006522	Root Winter glycyrrhizin high producing strain	18.462
DRR006523	Root Summer glycyrrhizin low producing strain	35.366
DRR006524	Root Summer glycyrrhizin low producing strain	33.239
DRR006525	Leaf Summer glycyrrhizin high producing strain	47.004
DRR006526	Leaf Summer glycyrrhizin high producing strain	47.014

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.266
SRR2868004	Drought Stress (root)	16.329
SRR2967015	Control (root)	16.377

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.215
SRR9715740	Leaf	54.090
SRR9715741	Leaf	32.783
SRR9715739	Root	19.456
SRR9715742	Root	21.252
SRR9715743	Root	20.058

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.580
SRR8749028	MeJA induced 9h	5.909
SRR8749029	MeJA induced 9h	7.949
SRR8749030	Uninduced	1.705
SRR8749031	Uninduced	0.685
SRR8749032	Uninduced	1.285

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.447
SRR8400027	Control - Root	38.741