Gene detail information of Glyur002652s00039339 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G13200.1 | 2.00E-81 | GRAM domain family protein |
| NR | XP_004493008.1 | 1.32E-161 | PREDICTED: GEM-like protein 5-like [Cicer arietinum] |
| Swissprot | tr|Q9LYV6|GEML5_ARATH | 9.00E-106 | GEM-like protein 5 |
| trEMBL | tr|C6TMI3|C6TMI3_SOYBN | 5.00E-159 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU24125.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02652 | 22370 | 27582 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002652s00039339.1 | PF02893.15 | GRAM | 176 | 250 | 4.00E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 23.638 |
| SRR1783600 | control | 23.739 |
| SRR1783602 | moderate drought stress | 22.604 |
| SRR1811619 | moderate drought stress | 22.631 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.003 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 24.237 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.842 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.610 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 88.842 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 87.968 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 30.671 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 30.989 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.090 |
| SRR2868004 | Drought Stress (root) | 29.346 |
| SRR2967015 | Control (root) | 23.841 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 67.520 |
| SRR9715740 | Leaf | 35.715 |
| SRR9715741 | Leaf | 76.579 |
| SRR9715739 | Root | 18.924 |
| SRR9715742 | Root | 60.177 |
| SRR9715743 | Root | 48.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 553.615 |
| SRR8749028 | MeJA induced 9h | 822.640 |
| SRR8749029 | MeJA induced 9h | 1393.133 |
| SRR8749030 | Uninduced | 351.077 |
| SRR8749031 | Uninduced | 428.964 |
| SRR8749032 | Uninduced | 553.410 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.569 |
| SRR8400027 | Control - Root | 28.049 |