Gene detail

Gene detail information of Glyur002652s00039337

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G26810.1	auxin signaling F-box 2
NR	XP_007161649.1	hypothetical protein PHAVU_001G087000g [Phaseolus vulgaris]
Swissprot	tr\|Q9LPW7\|AFB3_ARATH	Protein AUXIN SIGNALING F-BOX 3
trEMBL	tr\|V7CWC2\|V7CWC2_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW33643.1}

Sequence

Transcript Sequence

>Glyur002652s00039337.1
GGTTTGAGTTGAGTTGAAACCCCTTCCCTTATGACTGNGTTTTGGTTTTAGCAAGAGGAAGAAAGAGCATGTGACTGTGAGTGAAAAGAAAAAAAAAAAAGTAACAAGTGAGGAAGAAAGGGTTTGGTTTTGTGCTTCTTTCTCTCACTCTCTAAACTCTCACCTCTGAGGTGGTGGTGTTGCACCGTTGCTCTATAATGTAAATTACGTTTGGTGCAAAACTTAGATTTTCTCAGATCTATCCAAGTTCATATATATTTTTTTTGAGTGGAAATCCTATATCACCATCATCATCATCATCGCCGTTTGATTTGTAAGATCATAATTTTTTTTTCTGTTTGGTTTTCTTCTCTCCCATGCAATTTTCCTTCTCTTACTGTATTTTCCCGAGAAAATCTGTGTTCTCTTTTGTTACTCTCTTAGCAGATCCAAGCTGGAAAATGTAAATTTTTCAATTTTTATCACTACCCTTTTTCCTTTGAATTATTTTTATCCTTTTTCTTAGATCTCTCATCATGTCCGAGATTTGAGGATCTTGTTAACTCACTCTTTTTTGAGCCAAGATCTGNTTTTTTTCCTTCCCTTCTGATTTCCAAGATTATCTCAGTGTTTCAGATCTTGGGTNTTTTTTCCCACTAGTGTTTTCTTTTCTTCTCTTTTTTCCTCCCTTGTTGGAGTATGAAAGTTTTCCGGGAAAGTTGGGGGGTTTGGATCTCTTGAGTGAGAGAAAGAAGAGAAAAGAAAAAGAGAGAGAAACAAAAGTAAAAGATGAATTATTTTCCAGATGAGGTAATAGAGCATGTATTTGACTATGTGGTATCACACCGTGACCGAAACGCTTTGTCTCTGGTGTGCAAAAGCTGGTATAGAATAGAGAGATGTACAAGGCAGAAGGTGTTCATAGGGAACTGTTACTCTATTAGTCCTGAGAGGTTGATCCAGAGGTTCCCTTCTCTCAAGTCTCTAACTTTGAAAGGAAAGCCTCATTTTGCTGACTTCAGTTTGGTTCCTTATGGTTGGGGTGGTTTTGTGTATCCATGGATTGAGGCACTTGCCAAGGGAAGGGTTGGTTTGGAGGAGCTTAGGCTAAAGAGGATGGTGGTCTCGGATGAGAGCCTGGAGCTACTTTCTCGTTCTTTCATGAATTTCAAATCTCTTGTTCTTGTTAGCTGTGAAGGGTTCACCACCGATGGCCTTGCTGCTGTAGCTGCAAATTGCAGGTGTCTTAGGGAGCTGGACCTGCAAGAGAATGAAGTTGATGATCACAAAGGACAGTGGCTAAGTTGCTTTCCCGACAGCTGTACATCACTTGTCTCTCTTAATTTTGCTTGCCTTAAAGGGGAGGTTNGCTTGGGAGCTCTCGAGAGACTCGTCGCAAGATCTCCTAACCTCAAGAGTTTAAGGCTAAATCGTTCGGTGCCTCTTGATGCGCTACAAAGGATACTCATGCGAGCNCCCCAACTAGCAGACTTGGGTATCGGATCGTTTGTCCATGATCCCGACTCAGAGACCTACNCGAAGCTAAAGACTACCATTCTGAAGTGCAAGTCGATAACTAGTTTGTCGGGGTTTTTGGAGGTTGCTCCTCACTGCCTTTCAGCTATATATCCAATTTGCCATAACTTAACATCCTTGAACTTGAGCTATGCAGCAGGCATTCAGGGTAGTGTTCTGATAAAGCTAATTCGCCACTGTGGGAAGCTTCAGCGCTTATGGATAATGGATTGCATTGGAGACAAAGGGCTAGGTGTTGTAGCCAGCACATGTAAGGACTTGCAAGAATTGAGGGTTTTTCCATCTGTTCCCTTTGGAAATCCTGCAGCTGTCACAGAAAAGGGACTGGTTGCAATATCAATGGGGTGCCCCAAGCTTCACTCCTTGCTCTACTTCTGCCACCAGATGACAAATGCNGCCCTCATAACAGTGGCGAAGAACTGCCCGAATTTCATCCGCTTCAGGCTGTGCATCCTCGACGCGACAAAGCCCGACCCGGACACAATGCAGCCGCTGGATGAAGGTTTCGGGGCAATCGTGCAGTCATGCAGGCGACTGAGGCGGCTATCACTCTCGGGGCAGTTGACCGACCAGGTCTTCCTNTACATTGGAATGTATGCCGAGCAGCTCGAGATGCTGTCCATTGCATTTGCCGGGGAGAGTGACAAGGGGATGCTCTATGTGCTGAACGGATGCAAGAAACTCCGGAAGCTGGAGATAAGGGACAGCCCCTTCGGCAACACGGCGCTTCTGACGGACGTAGGGAAGTATGAAACAATGCGATCCCTTTGGATGTCGTCCTGCGAAGTGACCGTCGGAGCATGCAAGACACTAGCGAAGAGGATGCCGAGGTTGAACGTGGAGATCTTCAATGAAGGCGAGCAAGCGGATTGTAGTCTGGAAGATGGGCAGAAGGTAGAGAAGATGTATTTGTACCGTACATTGGCTGGGAAGAGGAAAGATGCACCGGAATATGTATGGACTCTGTAGGTGCATTGGATTGGATTCTAGGGTCTTTTTAATNTTTCTTCTGTTGTTTATTCAGCAGTTTGTACTCTGTTTAGGGCCTGACTGATTAATGCCAATTTTAGCCGACGGATGTAGTGGTGGTGGTTTGTTATTTACATGCACTTGCTAGTTTTTGTATNCATATATATTAGATATTAGATGCCTCCACTTTTTCTCCAGATTAAACTAATTGTTATTANTATTCCATAATGCCACTCTCGCTTTGTTAATATGTTGGGATTGAGTCTTTTGTTATAGTTAACAATAGCGGGCAATAGTGGCGCTATAGCGGATTGGAGTGGCCGGTGGTTACTGGTTGGTATTTGAAGACTGTAGCGGAGCGCTTTTTTTTTTTGGTCAACGAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02652	4856	8382	+

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002652s00039337.1	PF12937.2	F-box-like	3	35	5.50E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	63.913
SRR1783600	control	64.428
SRR1783602	moderate drought stress	100.696
SRR1811619	moderate drought stress	99.403

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	70.024
DRR006520	Root Summer glycyrrhizin high producing strain	68.854
DRR006521	Root Winter glycyrrhizin high producing strain	28.825
DRR006522	Root Winter glycyrrhizin high producing strain	27.653
DRR006523	Root Summer glycyrrhizin low producing strain	57.266
DRR006524	Root Summer glycyrrhizin low producing strain	57.324
DRR006525	Leaf Summer glycyrrhizin high producing strain	32.935
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.642

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	92.790
SRR2868004	Drought Stress (root)	111.086
SRR2967015	Control (root)	132.230

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	49.851
SRR9715740	Leaf	59.576
SRR9715741	Leaf	56.642
SRR9715739	Root	114.883
SRR9715742	Root	85.075
SRR9715743	Root	92.662

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	95.316
SRR8749028	MeJA induced 9h	47.517
SRR8749029	MeJA induced 9h	32.301
SRR8749030	Uninduced	8.686
SRR8749031	Uninduced	3.592
SRR8749032	Uninduced	6.047

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	121.663
SRR8400027	Control - Root	112.428