Gene detail information of Glyur002648s00038873 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G31540.2 | 8.00E-33 | Disease resistance protein (TIR-NBS-LRR class) family |
| NR | KHN12089.1 | 8.89E-110 | TMV resistance protein N [Glycine soja] |
| COG | YP_005320665.1 | 2.00E-07 | putative lipoprotein [Saprospira grandis str. Lewin] |
| Swissprot | tr|F4KHH8|RPS6C_ARATH | 3.00E-36 | Disease resistance protein RPS6 |
| trEMBL | tr|K7K1J3|K7K1J3_SOYBN | 6.00E-113 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G03980.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02648 | 32234 | 37052 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002648s00038873.1 | PF00931.17 | NB-ARC | 5 | 139 | 1.00E-16 |
| Glyur002648s00038873.1 | PF07725.7 | LRR_3 | 219 | 238 | 5.50E-07 |
| Glyur002648s00038873.1 | PF00560.28 | LRR_1 | 448 | 464 | 1.1 |
| Glyur002648s00038873.1 | PF00560.28 | LRR_1 | 495 | 516 | 0.34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.622 |
| SRR1783600 | control | 3.541 |
| SRR1783602 | moderate drought stress | 4.616 |
| SRR1811619 | moderate drought stress | 4.648 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.724 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.117 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.146 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.071 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.630 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.472 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.429 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.007 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.217 |
| SRR2868004 | Drought Stress (root) | 2.666 |
| SRR2967015 | Control (root) | 4.157 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.002 |
| SRR9715740 | Leaf | 2.234 |
| SRR9715741 | Leaf | 8.305 |
| SRR9715739 | Root | 1.663 |
| SRR9715742 | Root | 9.236 |
| SRR9715743 | Root | 7.537 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.480 |
| SRR8749028 | MeJA induced 9h | 1.889 |
| SRR8749029 | MeJA induced 9h | 1.125 |
| SRR8749030 | Uninduced | 0.477 |
| SRR8749031 | Uninduced | 0.187 |
| SRR8749032 | Uninduced | 0.274 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.349 |
| SRR8400027 | Control - Root | 9.545 |