Gene detail

Gene detail information of Glyur002648s00038867

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G23330.1	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004503341.1	PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330-like [Cicer arietinum]
Swissprot	tr\|Q9LW63\|PP251_ARATH	Putative pentatricopeptide repeat-containing protein At3g23330
trEMBL	tr\|G7LBG4\|G7LBG4_MEDTR	PPR containing plant-like protein {ECO:0000313\|EMBL:AET05451.1}

Sequence

Transcript Sequence

>Glyur002648s00038867.1
ATGAGTAGTTGTTGTAGTTGTGGTAGCAGCGCCAGCAGCAGCACAGAACAGGTGATCACAAGAATTCTCAGAAACCCAAACAGGAGGGTTTCCACACGGCAAGCCAAGCAACTCCACGGCCACNTGGTGAGGACGAAAGGAACATCCCACCCCGACAACTCCCTCGTACTCTCCCTCTANACCAACCTCAACCTCCTACCCCTCTCCGTTCTTCTCTTCCGGTTCCTTCCCTCTCCCCCTCCCCCACTAGCGTGGTCCTCCCTCATCAAATGCTACACCTCCCACAACCTCCCCCACCTCTCCCTCTCCTCCTTCAACTCCATGCGCTCCCTCGGCGTCTCCCCCAACCGCCACGTGTTCCCTTCCCTCCTCAAGGCTTCCACACTCTTGAACCACCACAACCTCGCCCTCTCCCTCCACGCCTCCGCCATTGTCCTCGGCCTCGACCTCGACCTCTACACCGCCAACGCACTCATCAACATGTACTCCAAGTTTGATGGAATCTCTCGGGGGATTGTAATGGGTAGTGTTAGGAAGGTGTTTGATGTTATGCCTGTGAGGGATGTTGTTTCGTGGAACACTGTCATTGCCGGGAATGCTCAGAATGGGATGTACCCTGANGCATTGGCCATGGTTAGGGAGATGGGGGTTAATGCCAACTTGAAGCCTGATTCCTTCACCTTGTCCAGCGTTCTTCCGATTTTCGCNGAGTACGTTGATGTTTACAAGGGGAAGGAGATTCATGGTTATGCTGTTAGACATGGTTTTGATGGGGATGTTTTCATTGCGAGTAGCTTGATTGACATGTATGCAAAATGTACCCGGTTGGAGCAGTCACTAACTGCGTTTCACCTCTTGCCCGAAAAGGATGCCATCTCTTGGAATTCTATCATTGCGGCTTGTGTGCAGAATGGGAGGTTTGATCAGGGGCTTTGGTTATTTCGTCGAATGTTGAAGGAGAAAGTGAGACCGATGCACGTTTCTTTCTCAAGTGTTATACCCGCATGTGCTCATTTGACGGCGTTGAATTTGGGGAAGCAGCTCCATGGATGTATAATTAGGCTCGGGTTTGATGATAACAAGTTCATTGCCAGCTCTCTGGTGGACATGTATGCCAAATGTGGTAACATCAAGATGGCTAGATATGTTTTCGACAGGATAGAGATTCGGATGCGTGACATGGTGGCATGGACCGCCATCATTATGGGATGTGCCGTGCACGGGCATGCCCTTGATGCAGTTTCATTGTTTGAGAGGATGCTAGAGGATGGAGTGAGGCCCTGCTATGTGGCATTCATGGCTGTTTTGANCGCGTGCAGTCATGCCGGGTTGGTGGATGAAGGTTGGAAGTATTTTCACAGTATGGAGAGGGATTTTGGTATTGCTCCTGGCCTGGAGCACTATGCTGCTGTTGCAGACCTGCTTGGTAGAGCTGGAAGATTAGAGGAAGCCTATGACTTCATTTCTAACATGGGGATACAGCCAACGGGGAGTGTGTGGTCAACATTGTTGGCTGCTTGCAGGGCACACAAGAGTGTTGAATTGGCTGAGAAGGTTGTTGACAAGATACTTTTGATCGACCCTGAAAACATGGGTGCTTATATTCTAATGTCAAACATCTATTCAGCTGCCCAGAGATGGAGACATGCTGCAAAGTTGAGAATCCTCATGAGAAAAAGGGGATTGAAGAAGACCCCGGCGTGCAGCTGGATCGAGGTTGGAAACAAAGTGCATGCTTTTCTCGCCGGAGATAAATCGCATCCGTATTATGACAAAATAAACGAGGCGTTGGATGTTTTATTGGAACAGATGGAGAAGGAAGGTTATGTCCTTGACACAAATGAGGTGCTCCATGATGTTGATGAGGAACATAAGCGTGACTTGTTGCACACCCACAGCGAGAGACTTGCCATAGCATTTGGCATCATTAGCACCCCTGCTGGTACAACCATCCGTGTGATAAAGAATATTCGGGTGTGTGTGGACTGCCACACTGCAATCAAATTTATTGCAAAGATTGTTGGCAGGGAAATCATCGTGAGGGATAATAGCCGATTTCACCATTTCAAGAATGGCTCTTGTTCGTGCGGTGATTATTGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02648	3577	5679	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002648s00038867.1	PF01535.15	PPR	84	113	0.019
Glyur002648s00038867.1	PF01535.15	PPR	190	215	0.00051
Glyur002648s00038867.1	PF13041.1	PPR_2	289	337	1.50E-08
Glyur002648s00038867.1	PF01535.15	PPR	365	387	0.21
Glyur002648s00038867.1	PF01535.15	PPR	395	425	5.80E-06
Glyur002648s00038867.1	PF01535.15	PPR	430	457	0.021
Glyur002648s00038867.1	PF14432.1	DYW_deaminase	568	690	1.40E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.590
SRR1783600	control	2.546
SRR1783602	moderate drought stress	3.642
SRR1811619	moderate drought stress	3.460

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.885
DRR006520	Root Summer glycyrrhizin high producing strain	1.724
DRR006521	Root Winter glycyrrhizin high producing strain	0.212
DRR006522	Root Winter glycyrrhizin high producing strain	0.311
DRR006523	Root Summer glycyrrhizin low producing strain	2.441
DRR006524	Root Summer glycyrrhizin low producing strain	2.299
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.663
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.571

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.192
SRR2868004	Drought Stress (root)	2.741
SRR2967015	Control (root)	2.645

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.604
SRR9715740	Leaf	0.847
SRR9715741	Leaf	1.006
SRR9715739	Root	1.233
SRR9715742	Root	1.706
SRR9715743	Root	1.953

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.496
SRR8749028	MeJA induced 9h	1.050
SRR8749029	MeJA induced 9h	0.763
SRR8749030	Uninduced	0.196
SRR8749031	Uninduced	0.260
SRR8749032	Uninduced	0.139

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.755
SRR8400027	Control - Root	2.850