Gene detail information of Glyur002647s00039511 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G20040.1 | 1.00E-131 | Pectin lyase-like superfamily protein |
| NR | XP_003547413.1 | 0 | PREDICTED: polygalacturonase QRT3-like [Glycine max] |
| Swissprot | tr|O49432|QRT3_ARATH | 2.00E-110 | Polygalacturonase QRT3 (Precursor) |
| trEMBL | tr|I1MGU8|I1MGU8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G16930.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02647 | 21701 | 27200 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002647s00039511.1 | PF13229.1 | Beta_helix | 209 | 365 | 1.10E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.226 |
| SRR1783600 | control | 11.259 |
| SRR1783602 | moderate drought stress | 11.159 |
| SRR1811619 | moderate drought stress | 11.259 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.063 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.139 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.158 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.963 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.048 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.187 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.744 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.680 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.531 |
| SRR2868004 | Drought Stress (root) | 2.282 |
| SRR2967015 | Control (root) | 2.951 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.740 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 2.425 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 2.353 |
| SRR9715743 | Root | 1.648 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.546 |
| SRR8749028 | MeJA induced 9h | 0.392 |
| SRR8749029 | MeJA induced 9h | 1.134 |
| SRR8749030 | Uninduced | 0.137 |
| SRR8749031 | Uninduced | 0.610 |
| SRR8749032 | Uninduced | 0.440 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.323 |
| SRR8400027 | Control - Root | 1.548 |