Gene detail information of Glyur002647s00039510 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G13770.1 | 4.00E-09 | Protein of unknown function, DUF647 |
| NR | XP_004490194.1 | 2.49E-10 | PREDICTED: UPF0420 protein C16orf58 homolog isoform X2 [Cicer arietinum] |
| Swissprot | tr|Q84JB8|RUS3_ARATH | 2.00E-10 | Protein root UVB sensitive 3 {ECO:0000303|PubMed:19515790} |
| trEMBL | tr|I1J605|I1J605_SOYBN | 1.00E-10 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G07190.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02647 | 12110 | 13698 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.353 |
| SRR1783600 | control | 5.394 |
| SRR1783602 | moderate drought stress | 8.047 |
| SRR1811619 | moderate drought stress | 4.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.690 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.351 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.327 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.130 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.812 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.536 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.876 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.484 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.574 |
| SRR2868004 | Drought Stress (root) | 8.523 |
| SRR2967015 | Control (root) | 8.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.425 |
| SRR9715740 | Leaf | 1.242 |
| SRR9715741 | Leaf | 2.597 |
| SRR9715739 | Root | 0.553 |
| SRR9715742 | Root | 1.769 |
| SRR9715743 | Root | 2.486 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.644 |
| SRR8749028 | MeJA induced 9h | 4.138 |
| SRR8749029 | MeJA induced 9h | 0.662 |
| SRR8749030 | Uninduced | 0.596 |
| SRR8749031 | Uninduced | 0.257 |
| SRR8749032 | Uninduced | 0.639 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.716 |
| SRR8400027 | Control - Root | 19.064 |