Gene detail

Gene detail information of Glyur002642s00041085

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G19490.1	1.00E-157	recA DNA recombination family protein
NR	XP_003595205.1	0	RecA [Medicago truncatula]
COG	YP_391858.1	1.00E-130	recA protein [Thiomicrospira crunogena XCL-2]
Swissprot	tr\|Q9ZUP2\|RECA3_ARATH	0	DNA repair protein recA homolog 3, mitochondrial (Precursor)
trEMBL	tr\|G7IIL3\|G7IIL3_MEDTR	0	DNA repair and recombination protein {ECO:0000313\|EMBL:AES65456.1}

Sequence

Transcript Sequence

>Glyur002642s00041085.1
CATGCATTGCATAGTTTGCANTGCAATATAAAAACAAAAAACTAAAAAAAAAAAAACCATTCCAGTTTCCTTCACTTCACACTTCATAACGAAAAAAAAATCCTTTTTTTTTGTGCTTCACTGCTTCTATTCTATGGCGAGGCTACTTCGCAACGCCAACACTTTTCTCCTCAAGCGCTCTTTCTTCCACCCTGACCTTCCAACGCGCTTTTGCTTTAAAAATGGAATATTGGGCACGTCTCAAGTTCTGAGCTTTTCAACTCATAAAGGTAAAAGGCGCTCTAAATCGGATGGAGATGACTCGAGTGAAGAGAACATGTCTAAGAAAGATTTGGCCTTACAGCAAGCCATGGATCAGATCACCTCTGCATTTGGAAAGGGATCAATAATGTGGCTTGGTCGATCTGTCTCACCCAAAAATGTACCTGTGGTGCCAACTGGTTCTTTTGCTCTTGATATAGCACTAGGAATCGGTGGNCTTCCAANGGGGCGCGTTGTGGAAATATTTGGTCCAGAGGCTTCTGGGAAAACAACTCTTGCTTTGCATGTGATTTCAGAGGCACAGAAGCTNGGAGGCTATTGTGCCTTTGTTGATGCTGAGCATGCACTTGATAAGACACTTGCAGAGTCTATTGGGGTAAATACTGAGAACTTGCTTCTCTCGCAACCAGATTGTGGTGAACAAGCACTCAGCCTCGTGGATACTTTAATTCGAAGTGGATCGGTTGATGTAGTTGTTGTTGACAGCGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAAATGGGTGATGCTCACATGGCAATGCAAGCTAGGTTGATGAGCCAGGCGCTTCGGAAATTGTGCCACTCCTTGTCACTCTCACAGTGTATATTGATTTTTATAAACCAGGTGAGGTCAAAGATTTCTACTTTTGGGGGATTTGGTGGGCCTACTGAAGTTACTTGTGGTGGTAATGCATTGAAATTCTATTCTTCTGTGCGGCTAAATATCAAAAGAGTTGGGTTTGTCAAGAAGGGTGAAGAGACTTTGGGAAGCCAGGTTCTTGTCAAGGTTGTGAAGAACAAGCATGCCCCTCCATTCAAAACTGCACAGTTTGAGCTTGAGTTTGGCAAGGGCATATGTAGAGAAGCAGAGCTTATAGAGTTGAGTGTAAAACACAAACTCATAAGAAAGAATGGTTCGTTCTATGAATACAATGGCCGGAATTACCATGGTAAGGATGCTCTAAAGAGGTTTCTGGCCACCGGCGATGTCGTGCAAGAATTAACAACAAAGCTCAGGGAAAAGCTTCTCAATGCCGATACGGAAACGGTACCGGACGCACAGGTGATGATGGTTGGAGATGTAACNGAAGAAACGGTATCACCTGATTCTACTGATGAAGAGGCAGTTGCTGCTGTAGAAGCTTGAATTTACACCTATAACGTTAAAGGAGGAGGTTTCTTCGTGTTCAATTGAAGGCGGCTCTAAAATGCAACGGATGCTTACTGTGCTTCTTGTTTGGACTTTGGAAGTGACATCATTCCTTGTGGCCACATGGCACATTGCCTTTGTAAATCGGAAATTTTCGGTCATTTTACGCAGGCCATGCTAGTCACGTGGCAAGTCCAAGTTTTGTGGCTGAGGAAAAGGACTATCTGGTTGGGAATCAATCAAGGGCCAATGCTTGTCAAGAGTNAAGTCATGACGATTATTTGTAAGGATATTATTAATTTACGATTTGTATAGTTGTATTGTATTGGTGCATATGTATCTCAATCTGGTAGCTGCGGTGCTCTTGCTTGCATCTTTATTTCCATCTCCTAACCCCTTTGTTTTGGTGGATGATAATTTCATTCTGGGTAATGATATGAACAAGAAATGGATTATTTGTGATCNGGGCGATGAATCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02642	28311	34299	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006259 DNA metabolic process

GO:0006281 DNA repair

GO:0009432 SOS response

molecular_function

GO:0003677 DNA binding

GO:0003697 single-stranded DNA binding

GO:0005524 ATP binding

GO:0008094 DNA-dependent ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002642s00041085.1	PF00154.16	RecA	68	388	1.20E-132

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.451
SRR1783600	control	1.361
SRR1783602	moderate drought stress	1.227
SRR1811619	moderate drought stress	1.185

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.766
DRR006520	Root Summer glycyrrhizin high producing strain	1.753
DRR006521	Root Winter glycyrrhizin high producing strain	0.820
DRR006522	Root Winter glycyrrhizin high producing strain	0.739
DRR006523	Root Summer glycyrrhizin low producing strain	1.162
DRR006524	Root Summer glycyrrhizin low producing strain	1.150
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.682
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.757

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.733
SRR2868004	Drought Stress (root)	3.153
SRR2967015	Control (root)	2.411

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.428
SRR9715740	Leaf	1.486
SRR9715741	Leaf	1.242
SRR9715739	Root	0.740
SRR9715742	Root	1.252
SRR9715743	Root	1.289

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.247
SRR8749028	MeJA induced 9h	6.879
SRR8749029	MeJA induced 9h	7.362
SRR8749030	Uninduced	0.887
SRR8749031	Uninduced	0.365
SRR8749032	Uninduced	0.285

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.264
SRR8400027	Control - Root	4.340