Gene detail

Gene detail information of Glyur002638s00042498

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G42450.1	5.00E-147	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_003549029.2	0	PREDICTED: pentatricopeptide repeat-containing protein At5g42450, mitochondrial-like [Glycine max]
Swissprot	tr\|Q9FIH2\|PP414_ARATH	8.00E-180	Pentatricopeptide repeat-containing protein At5g42450, mitochondrial (Precursor)
trEMBL	tr\|K7MI15\|K7MI15_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G29850.2}

Sequence

Transcript Sequence

>Glyur002638s00042498.1
ATGAAAAACTTAGTTTCTAGACTCTCTATACCTACATGGATCACACCCCATGTTGTTTCCTGTGGCTATCTTACTGAAACCCTTCATGCCCAAGCCACCAAGCGTGACACAAATGTTGTACAAACAAACATTCAACCATGTAGCCTTGATTCAACCAGTTTCCATGTTGCCTGCCACATGTTTGAAGAAATGTCTGACTTAACCGTTTCCTCAGCAACCGCCATAATTGGCGGCTTTGCCAAGCGGCACTGCCATGAAGAAGCCATTTACCTCTTCTCAAGATTGCTTGCCTCGAAGATCATTAGACCCAATGAGTTCACATTTGGAACTGTGCTTCACTCTTCCACTGTACTTGGAGATGTGTTTGTTGGTAGACAGCTTCATGCTTGTGCAACCAAGATTGGCCTTGGAAGCCATGTGTTTGTTGGTAGTGCACTTCTTGATTTGTATGTCAAGTTGAGTAGTACTATGGAAGAAGCACAGAAGGCCTTTGAAGATACCCAACACCCCAATGTGGTGTCTTACACAACTCTGATTTGTGGGTATCTGAAGAGGAGGAATTTTGAAGATGCTTTGCGGGTTTTCCGCGAGATGCCTGAGAGGAACATTGTCTCGTGGAATGCGATGGTCGGTGGGTGCAGCCAAACAGGCCATAATGAAGAAGCTGTGAGATTTTTTATTGACATGGTTAGGGAAGGATTTATACCAAATGAATCTACATTTCCCTGTGTGATTAGTGCATCAGCAAATATAGCTGCCCTTGGAATTGGGAAGAGCTTCCATGCATGTGCAATCAAGTTTCTGGGTAAGCTTAATGCTTTTGTTGGTAATTCACTTATTAGCTTCTATGCAAAGTGTGGAAGCATGGAAGACAGCCTCCTAATGTTTGACAAGCATTGTAAGAGGAACATAGTGTCGTGGAACGCTGTGATATGCGGTTATGCACAGAATGGAAGAGGCNTTGAAGCGATAAGCTTCTTCGAAAGAATGGTTTCTGCAGGCTGTAAACCGAATGAGATTACCCTTCTTGGACTACTCTGGGCTTGTAATCATGCTGGTCTTGTTGATGAGGGTTACTCATATTTCAATAAGGCCAGGATTGAGAGTCCCAGCTTGCTAANACCTGAGCATTATGCTTGCATGGTTGACATGCTCGCTCGCTCTGGACGTTTCACAGAAGCCGAGAGTTTCCTTCGCAGTTTGCCTTTTGACCCTGGAATCGGGTTTTGGAAGGCGTTACTTGGGGGCTGCCAAATCCACTCGAACATCGAGTTGGGGGAGCTTGCGGCAAGAAAGATTTTGACTTTGGATCCTGATGATGTATCATCATATGTGATGTTGTCGAATGCTCATTCTGCAGCTGATGAGACTGGCCATTCTGCTGCTGTGAAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02638	27703	29397	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002638s00042498.1	PF01535.15	PPR	73	98	0.5
Glyur002638s00042498.1	PF12854.2	PPR_1	169	199	9.70E-08
Glyur002638s00042498.1	PF13041.1	PPR_2	202	247	4.20E-10
Glyur002638s00042498.1	PF01535.15	PPR	277	298	0.18
Glyur002638s00042498.1	PF13041.1	PPR_2	303	346	4.30E-11
Glyur002638s00042498.1	PF01535.15	PPR	378	399	0.65

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.062
SRR1783600	control	1.024
SRR1783602	moderate drought stress	0.884
SRR1811619	moderate drought stress	1.069

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.023
DRR006520	Root Summer glycyrrhizin high producing strain	1.210
DRR006521	Root Winter glycyrrhizin high producing strain	0.799
DRR006522	Root Winter glycyrrhizin high producing strain	0.461
DRR006523	Root Summer glycyrrhizin low producing strain	1.111
DRR006524	Root Summer glycyrrhizin low producing strain	1.076
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.273
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.332

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.999
SRR2868004	Drought Stress (root)	1.041
SRR2967015	Control (root)	0.932

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.020
SRR9715740	Leaf	1.104
SRR9715741	Leaf	0.614
SRR9715739	Root	2.193
SRR9715742	Root	1.403
SRR9715743	Root	0.805

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.158
SRR8749028	MeJA induced 9h	0.694
SRR8749029	MeJA induced 9h	0.414
SRR8749030	Uninduced	0.267
SRR8749031	Uninduced	0.097
SRR8749032	Uninduced	0.442

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.573
SRR8400027	Control - Root	2.405