Gene detail

Gene detail information of Glyur002638s00042497

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G24020.1	9.00E-127	septum site-determining protein (MIND)
NR	XP_004513184.1	0	PREDICTED: putative septum site-determining protein minD homolog, chloroplastic-like [Cicer arietinum]
COG	YP_007130436.1	4.00E-81	septum site-determining protein MinD [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|Q9MBA2\|MIND1_ARATH	3.00E-176	Putative septum site-determining protein minD homolog, chloroplastic (Precursor)
trEMBL	tr\|W9RS56\|W9RS56_9ROSA	0	Site-determining protein {ECO:0000256\|PIRNR:PIRNR003092}

Sequence

Transcript Sequence

>Glyur002638s00042497.1
ATGCTATCTCTCCACCCTCTCCCCGGCGCCGCCAATGCCAAACCCCAACTTCTCCACCACCACAACCCTTCAACCTTCCTCTCATTCCCCTTCCCCAAAACCCTAACCCTAAACCCCAAACCAAAACCCTACCCCCAAACAACAACAGCAACAGCAACACGTGCCCTCCTTCAATGGAACCGCAAGCCACAACTCGCGGGAGATACCCCACGCGTGGTAGTCGTAACCTCAGGCAAAGGCGGCGTTGGAAAAACCACAACAACCGCCAACATGGGCCTCTCANTGGCCCGTTTGGGCTTCTCCGTCGTCGCAATCGACGCCGACGTGGGCCTCCGAAACCTNGACCTCTTATTGGGCCTCGAGAATCGCGTCAACTACACCGTNGTAGAAGTCCTCAACGGCGATTGCAGGCTCGACCAAGCCCTCGTAAGAGACAAACGCTGGTCCAAATTCGAACTCCTCTGCATCTCAAAGCCTCGCTCGAAGCTTCCCATTGGCTTTGGNGGCAAGGCGCTGACGTGGCTCGTNGATTCGCTAAAGTCCCGGGCATCCGGCTGCCCGGACTTCGTGTTAATCGACTGCCCCGCCGGGATTGACGCTGGGTTTATAACCGCCATAACGCCCGCGAACGAGGCGGTTATAATAACCACACCGGATATAACGTCGCTGCGCGACGCGGACCGGGTNACCGGGTTGCTTGAGTGCGACGGCATTAGGGACATTAAGATGATTGTGAANCGGGTTAGGACTGATATGATTAAAGGGGAGGATATGATGTCTGTGCTTGATGTGCAGGAGATGTTGGGTTTGCCATTGCTTGGTGTGATACCTGAGGATTCTGAGGTTATTAGGAGTACCAATAGAGGGTACCCTCTTGTTTTGAATAAGCCACCAACACTTGCTGGGTTGGCTTTTGAGCAGGCTGCGTGGCGGCTTGTTGAACAGGATAGTATGCAGGCTGTTATGGTTGAGGAAGAACCCAAGCGTGGGTTCTTCTCCTTTTTCGGTGGATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02638	22383	23396	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0000918 barrier septum site selection

molecular_function
GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002638s00042497.1	PF01656.18	CbiA	73	283	5.00E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.997
SRR1783600	control	11.726
SRR1783602	moderate drought stress	13.199
SRR1811619	moderate drought stress	11.784

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.561
DRR006520	Root Summer glycyrrhizin high producing strain	17.734
DRR006521	Root Winter glycyrrhizin high producing strain	6.306
DRR006522	Root Winter glycyrrhizin high producing strain	6.273
DRR006523	Root Summer glycyrrhizin low producing strain	22.451
DRR006524	Root Summer glycyrrhizin low producing strain	23.058
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.482
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.228

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.477
SRR2868004	Drought Stress (root)	13.093
SRR2967015	Control (root)	15.405

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.187
SRR9715740	Leaf	16.352
SRR9715741	Leaf	8.250
SRR9715739	Root	37.521
SRR9715742	Root	30.443
SRR9715743	Root	33.018

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.002
SRR8749028	MeJA induced 9h	5.324
SRR8749029	MeJA induced 9h	2.994
SRR8749030	Uninduced	0.551
SRR8749031	Uninduced	0.377
SRR8749032	Uninduced	0.307

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.140
SRR8400027	Control - Root	24.544