Gene detail

Gene detail information of Glyur002638s00042496.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G25700.1	2.00E-95	beta-hydroxylase 1
NR	KEH26249.1	5.22E-147	beta-carotene hydroxylase [Medicago truncatula]
COG	YP_008147268.1	1.00E-27	hypothetical protein SCE1572_04045 [Sorangium cellulosum So0157-2]
Swissprot	tr\|Q9SZZ8\|BCH1_ARATH	6.00E-138	Beta-carotene 3-hydroxylase 1, chloroplastic (Precursor)
trEMBL	tr\|A0A072U8Y2\|A0A072U8Y2_MEDTR	2.00E-147	Beta-carotene hydroxylase {ECO:0000313\|EMBL:KEH26249.1}

Sequence

Transcript Sequence

>Glyur002638s00042496.1
NAAATGTTCCACAGACTCTCTACACTACTGACTTGACTACACACAACAACAACACAAAAAGCTGTGGTCTCTATTCTTCCCCCCTTTTTAAACCTTCACTCCACCCCTTCGCTCTTCACAACTCTCTCTCTCTCTCTCTCTCTCTTAGAAGCACACTTCCACAATTAGAAACACACTACAATTTTTCAATCCCAAACAACACTTGGGCTATGGCGGCAGCACTCTCCGCCACCATAACCTTAAAGCCCCTCTTCCTCCGTCATCGTCACCACCACCACCAACAACCCTTCTTTCCCCTTCTCCCAAAACCAACCCAAACAACAACAACAACCCCACGAACCCAAAGAATGATGAGAAGCTTCACCCTTGGTGTCCTCATGGAGGATCCCAAAAAACAACACCACACCCACATGGAAACGTCACAAGAAGAAGAAGAAGAAGAACCATCACCCCCTTCTCCTCCAATAATTGCTTCAGCAAGAGTGGCAGAGAGATTGGCAAGGAAAAAGTCAGAGAGGTTCACTTACCTTGTTGCAGCTGTGATGTCTAGCTTCGGCATCACGTCCATGGCTGTGTTGTCTGTTTATTCTAGATTCTCATGGCAAATGGAGGGTGGTGGTGAAGTTCCTTGGTCTGAAATGTTTGGCACATTTGCTCTCTCAGTTGGTGCTGCTGTGGGTATGGAGTTTTGGGCTAGATGGGCTCACAAGGCTCTATGGCATGCTTCCTTGTGGCACATGCATGAGTCACACCATAGACCAAGAGAAGGACCCTTCGAGCTGAACGATGTATTTGCAATCATCAATGCTGGCCCTGCCATCGCTCTCCTTTCCTATGGTTTCTTCCACAAGGGACTGGTCCCTGGCCTTTGTTTTGGTGCGGTAATATTTGGGATGGCCTACATGTTTGTACACGACGGTTTGGTTCATAAGAGATTCCCAGTGGGTCCCATTGCCAATGTACCCTACTTCAGAAGGGTAGCCGCTGCTCACCAACTTCACCATTCGGACAAATTCGATGGTGTGCCATATGGGCTGTTTTTGGGACCAAGGGAACTTGAAGAGGTGGGAGGGCTAGAGGAGCTGGANAAAGAGATAAGTAGGAGAGCAAGATCATACAAAAATAGTTCATGACAAAANCAAATACTAATCTAGATATGTTTCAGAGTCATCAGTGTAAAGAAATATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02638	9809	13578	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15746	crtZ	EC:1.14.13.129	Carotenoid biosynthesis	map00906

Gene Ontology

biological_process

GO:0006633 fatty acid biosynthetic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002638s00042496.1	PF04116.8	FA_hydroxylase	153	266	1.20E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.476
SRR1783600	control	10.481
SRR1783602	moderate drought stress	16.119
SRR1811619	moderate drought stress	16.251

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	56.612
DRR006520	Root Summer glycyrrhizin high producing strain	55.854
DRR006521	Root Winter glycyrrhizin high producing strain	10.990
DRR006522	Root Winter glycyrrhizin high producing strain	10.703
DRR006523	Root Summer glycyrrhizin low producing strain	61.253
DRR006524	Root Summer glycyrrhizin low producing strain	60.292
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.528
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.227

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.815
SRR2868004	Drought Stress (root)	35.390
SRR2967015	Control (root)	30.705

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	32.689
SRR9715740	Leaf	34.774
SRR9715741	Leaf	23.060
SRR9715739	Root	18.337
SRR9715742	Root	46.378
SRR9715743	Root	43.716

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.971
SRR8749028	MeJA induced 9h	7.837
SRR8749029	MeJA induced 9h	3.383
SRR8749030	Uninduced	2.936
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.996

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.159
SRR8400027	Control - Root	28.511