Gene detail

Gene detail information of Glyur002637s00037854

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	1.00E-108	NB-ARC domain-containing disease resistance protein
NR	XP_003601846.1	0	Nucleotide binding site leucine-rich repeat disease resistance protein [Medicago truncatula]
COG	NP_485676.1	3.00E-13	regulatory protein [Nostoc sp. PCC 7120]
Swissprot	tr\|Q7XA39\|RGA4_SOLBU	0	Putative disease resistance protein RGA4
trEMBL	tr\|G7J2J0\|G7J2J0_MEDTR	0	Disease resistance protein RGA4 {ECO:0000313\|EMBL:AES72097.1}

Sequence

Transcript Sequence

>Glyur002637s00037854.1
ATGGCTGATGCTTTACTTGGAATCGTGATTGAAAACCTCGGATCTTTTGTCCGAGAGGAGCTTGCAACGTTTTTGGGTGTCTATTCCATTACTGAACCCAAAGTTTATGGAAGAGACCATGATAGAGAGCAGGTTGTCGAGTTTCTTCTAAGGCATGCCAGTGANAGTGAAGAACTCTCTGTCTATTCCATAGTTGGCCACGGTGGATACGGAAAAACAACACTTGCTCAACTGGTCTTCAACGATGAAAGGGTAACCAACCATTTTGACTTGAAAATCTGGGTTTGTGTTTCCNATGATTTCAGTATGATGAAGATTCTACACTCCATCATAGAATCCGCCACTGGGCAAAGTCCTAATCTCTTGTCTTTGGAATCTATGCAAAAAAAAGTTCAAGAAGTGTTGCAAAGTAAAAGGTATTTACTTGTTCTTGATGATGTGTGGAATGAAGACCAAGATAAATGGGATAAGTTCAAGTATTTTTTGCAGAGTGGAAATAGAATGAAAGGTGCATCAGTTTTGGTCACTACACGACTTGAGATTGTTGCATCCATTGTGGGAACCTACCCGTCTCATCATTTGGTAGGTTTATCTGATGATGACATTTGGTCGTTGTTCAAACAACATGCTTTTGGACCAACCAGGGAAGAGCGTGCACAACTTGTAGCCATAGGCAAGGAGATAGTGAAAAAATGTGTGGGTTCGCCTCTTGCCGCCAAAGTAGTGGGGAGCCTTTTGCGTTTTAAAAGTGAGGAACACCAATGGCTTTCTATAATGCAAAGTAAGTTTTGGGATTTATCTGAGGATAATCGTATCATGTCTGCTCTAAGACTGAGCTACCTAAATTTGAAATCATCATTGAGGCCATGTTTTTCTTTTTGTGCAATTTTCCCCAAAGATTTTGTAATGGTGAAGGAACATCTAATTCATCTTTGGATGGCTAATGGATTTATTTCACCTAGAGGAAATTTAGAGGTAGAGCATGTTGGTAACGATGTGTGGAATGAACTATCCCAGAGATCATTTTTTCAAGAANTCAAAACCGATGAAGAAGGTAACATTACATTCAAAATGCATGATTTAGTCCATGATCTTGCTCAGACCATTATGGGAGAAGAATGTGTGGCTTCTGAGGCAGCAAGCTTGACTAATTTATCAAGCAGAGTTCACCACATAGGTTGTTTAGATTTTAATGAACGATTCGACTACAACATGATTCCCTTCAAGAAAGTTGAATCCTTGCGAACCTTTCTCGAGTTTGATCCACCCATCCCAAATTTAGGTGTGTTGCCATCTNTCACTCCACTTCGAGCATTGCGTACAAGTTCTTTTCAACTCTCATCACTAATGAATTTAACACATCTGAGGTACCTAGAACTTTATGGAAGCTACATCACAACCTTGCCTGGGTCTGTTTGTATGCTTAAGAAATTGCAAGTACTAAAACTAGAANGTTGTTATTTTCTTTCTAGTCTTCCCAAACAATTGACACAATTACAAGATCTTAGACATCTTGTGATTAAAGATTGTAAGTCATTAGTATCAATGCCTTCTAAAATTGGGGAGTTAACTTGTCTGAAAACATTGAGCATTTTCATTGTGGGTTCGAAGGTGGGGTTTGGTTTAGCAGAGTTACATGACTTACAACTAGGTGGCAAGCTGCACATCAAAGGCCTTGAGAATGTGTCGAATGAATGGGATGCTAGAGCAGCTAATTTGATTGGTAAAAAAGACTTAAATCGCTTATACTTGACATGGGGTAGTTATGCTAATTCACAAGGTAGTGGTACCAATGCCGAGCGAGTACTCGAAGCCCTTGAGCCTCACTCAGGTCTCAAGAGTTTTGGGATGAAGGGCTTTGAGGGAATACATTTTCCCCAGTGGATGAGAAACACTTCTATTATGAAAGGCTTAGTTGATGTTATACTCTACGACTGTAAAAAGTGTCAGCGGCTTCCTCCACTTGGTAAATTGCCATGTTTAACCACTCTTTTTGTATCTGGAATGAGAGATGTAAAGTACATTGATGATGACTTATATGAACCTGCCACTGAGAAGGCTTTTGTGTCATTGAAGAAANTGGTTTTGCGTGGTTTACCAAACTTAGAGAGGATGTTGGAAGTTGATGGAGTAGAGATGCTACCACAACTTTCCCACTTGAGAATTTCAGGTGTGCCCAAGCTTTCATTGCCACCACTTCCATCTGTTGAGTTCCTTCATTCTAATGGAAGAAATGAAGAGGGAATTGCGTGTAATATGCATCATCTTAAGAAACTTTTCATTGAACACTTTGATGAACTCAAGGCATTACCTGATGAACTCGCCACTTTTGGTGCCCTAGAGGAGCTTCACATTTCATTTTGTAACAAACTTGAGTCTTTTCCAGAGCATGTATTACAAGGTTTGTGTTCTCTGCGAACTTTGACCATTTTCTTATGCCGTGAACTGAAATCATTGTCCGAAGGTATGCAACACCTAACTTGTCTTGAGAGACTTGAAATCCTCCACTGTCCACAGCTTGTTTTACCAAGTAACATGAACAGGCTAACCGNCCTTCGTAAAGTGAGAATCTTGGGTGAGAATAAAAATGGCATGTTACCAGAGGGCTTAGAACTTATCCCTTCCCTACAAATTTTGACTCTGTCAGAATTTCCTTCTCTAACATCCTTGCCGGACTGGATGGGATCCATGACTTCTCTTCAAAAATTAGAAATCCGAATGTGTCCCAAGTTAAGGTCGCTACCNGATAACTTTCAGCAACTCAGAAACTTGCATGAATTATCTATTTACCATTGCCCTAAGCTGGAGAAGCGATGCAAGAAAGGAATTGGGAAAGATTGGCCTAAGATAGCTCATGTTCCTGANTTTGAATTACATGCAGAATGGACATTTTGTGAAAAAATCATATCAGCATGGAAGATGCGGAACCAATTCTTGCACCGTCATCGATACTATTACACTTCGGAGGATGAATTTGACAATCAACACACTTGCATGAACCGTGAGGTGGGCATTCAGATTTTCAAGACAGTTCATTATCATCAAAGGGTGGTGCCACTTTGCCACTCACAAGCATTAGGAGTTTCTGTGGATGATATTCAAAATCCTTGCTTACAG

Protein Sequence

>Glyur002637s00037854.1
MADALLGIVIENLGSFVREELATFLGVYSITEPKVYGRDHDREQVVEFLLRHASXSEELSVYSIVGHGGYGKTTLAQLVFNDERVTNHFDLKIWVCVSXDFSMMKILHSIIESATGQSPNLLSLESMQKKVQEVLQSKRYLLVLDDVWNEDQDKWDKFKYFLQSGNRMKGASVLVTTRLEIVASIVGTYPSHHLVGLSDDDIWSLFKQHAFGPTREERAQLVAIGKEIVKKCVGSPLAAKVVGSLLRFKSEEHQWLSIMQSKFWDLSEDNRIMSALRLSYLNLKSSLRPCFSFCAIFPKDFVMVKEHLIHLWMANGFISPRGNLEVEHVGNDVWNELSQRSFFQEXKTDEEGNITFKMHDLVHDLAQTIMGEECVASEAASLTNLSSRVHHIGCLDFNERFDYNMIPFKKVESLRTFLEFDPPIPNLGVLPSXTPLRALRTSSFQLSSLMNLTHLRYLELYGSYITTLPGSVCMLKKLQVLKLEXCYFLSSLPKQLTQLQDLRHLVIKDCKSLVSMPSKIGELTCLKTLSIFIVGSKVGFGLAELHDLQLGGKLHIKGLENVSNEWDARAANLIGKKDLNRLYLTWGSYANSQGSGTNAERVLEALEPHSGLKSFGMKGFEGIHFPQWMRNTSIMKGLVDVILYDCKKCQRLPPLGKLPCLTTLFVSGMRDVKYIDDDLYEPATEKAFVSLKKXVLRGLPNLERMLEVDGVEMLPQLSHLRISGVPKLSLPPLPSVEFLHSNGRNEEGIACNMHHLKKLFIEHFDELKALPDELATFGALEELHISFCNKLESFPEHVLQGLCSLRTLTIFLCRELKSLSEGMQHLTCLERLEILHCPQLVLPSNMNRLTXLRKVRILGENKNGMLPEGLELIPSLQILTLSEFPSLTSLPDWMGSMTSLQKLEIRMCPKLRSLPDNFQQLRNLHELSIYHCPKLEKRCKKGIGKDWPKIAHVPXFELHAEWTFCEKIISAWKMRNQFLHRHRYYYTSEDEFDNQHTCMNREVGIQIFKTVHYHQRVVPLCHSQALGVSVDDIQNPCLQ

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02637	26485	30417	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002637s00037854.1	PF00931.17	NB-ARC	40	320	1.20E-70

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.434
SRR1783600	control	2.330
SRR1783602	moderate drought stress	5.413
SRR1811619	moderate drought stress	5.426

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.367
DRR006520	Root Summer glycyrrhizin high producing strain	1.214
DRR006521	Root Winter glycyrrhizin high producing strain	0.340
DRR006522	Root Winter glycyrrhizin high producing strain	0.305
DRR006523	Root Summer glycyrrhizin low producing strain	1.027
DRR006524	Root Summer glycyrrhizin low producing strain	0.934
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.957
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.101

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.892
SRR2868004	Drought Stress (root)	2.573
SRR2967015	Control (root)	2.526

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.961
SRR9715740	Leaf	2.310
SRR9715741	Leaf	1.222
SRR9715739	Root	0.812
SRR9715742	Root	1.548
SRR9715743	Root	1.399

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.314
SRR8749028	MeJA induced 9h	0.121
SRR8749029	MeJA induced 9h	0.370
SRR8749030	Uninduced	0.093
SRR8749031	Uninduced	0.275
SRR8749032	Uninduced	0.249

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.769
SRR8400027	Control - Root	5.846