Gene detail information of Glyur002636s00045313 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G39160.3 | 3.00E-70 | RmlC-like cupins superfamily protein |
| NR | XP_004513532.1 | 9.30E-130 | PREDICTED: germin-like protein subfamily 1 member 7-like [Cicer arietinum] |
| Swissprot | tr|P92999|GL118_ARATH | 1.00E-85 | Germin-like protein subfamily 1 member 18 (Precursor) |
| trEMBL | tr|G7JQ50|G7JQ50_MEDTR | 4.00E-129 | Germin family protein {ECO:0000313|EMBL:AES86926.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02636 | 16373 | 17594 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002636s00045313.1 | PF00190.17 | Cupin_1 | 53 | 198 | 3.50E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.790 |
| SRR1783600 | control | 5.247 |
| SRR1783602 | moderate drought stress | 5.403 |
| SRR1811619 | moderate drought stress | 5.217 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.217 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.313 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.506 |
| SRR2868004 | Drought Stress (root) | 15.817 |
| SRR2967015 | Control (root) | 4.468 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 6.271 |
| SRR9715742 | Root | 3.928 |
| SRR9715743 | Root | 3.983 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.593 |
| SRR8749028 | MeJA induced 9h | 6.421 |
| SRR8749029 | MeJA induced 9h | 1.369 |
| SRR8749030 | Uninduced | 29.339 |
| SRR8749031 | Uninduced | 85.385 |
| SRR8749032 | Uninduced | 6.475 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 158.166 |
| SRR8400027 | Control - Root | 156.251 |