Gene detail information of Glyur002632s00037708.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G64660.1 | 3.00E-95 | methionine gamma-lyase |
| NR | XP_003601451.1 | 1.38E-126 | Cystathionine gamma-lyase [Medicago truncatula] |
| COG | YP_003195849.1 | 8.00E-53 | cystathionine beta-lyase [Robiginitalea biformata HTCC2501] |
| Swissprot | tr|Q9SGU9|MGL_ARATH | 2.00E-116 | Methionine gamma-lyase |
| trEMBL | tr|G7J805|G7J805_MEDTR | 5.00E-127 | Cystathionine beta-lyase/cystathionine gamma-synthase {ECO:0000313|EMBL:AES71702.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02632 | 12314 | 13083 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01761 | E4.4.1.11 | EC:4.4.1.11 | Cysteine and methionine metabolism | map00270 |
| Selenocompound metabolism | map00450 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002632s00037708.1 | PF01053.15 | Cys_Met_Meta_PP | 61 | 244 | 2.00E-52 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.071 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.371 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.150 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.052 |
| SRR2868004 | Drought Stress (root) | 0.220 |
| SRR2967015 | Control (root) | 0.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.244 |
| SRR9715740 | Leaf | 0.096 |
| SRR9715741 | Leaf | 0.390 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.428 |
| SRR8749028 | MeJA induced 9h | 1.092 |
| SRR8749029 | MeJA induced 9h | 0.332 |
| SRR8749030 | Uninduced | 6.688 |
| SRR8749031 | Uninduced | 9.501 |
| SRR8749032 | Uninduced | 17.131 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.243 |
| SRR8400027 | Control - Root | 0.092 |