Gene detail information of Glyur002627s00044990 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G72860.1 | 4.00E-33 | Disease resistance protein (TIR-NBS-LRR class) family |
| NR | XP_006386003.1 | 1.64E-47 | hypothetical protein POPTR_0003s19910g, partial [Populus trichocarpa] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 9.00E-39 | TMV resistance protein N |
| trEMBL | tr|U5GJU8|U5GJU8_POPTR | 6.00E-48 | Uncharacterized protein {ECO:0000313|EMBL:ERP63800.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02627 | 18529 | 19760 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002627s00044990.1 | PF01582.15 | TIR | 21 | 151 | 3.50E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.969 |
| SRR1811619 | moderate drought stress | 0.915 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.616 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.486 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.283 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.275 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.986 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.135 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.062 |
| SRR2868004 | Drought Stress (root) | 36.250 |
| SRR2967015 | Control (root) | 39.152 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.898 |
| SRR9715743 | Root | 0.911 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.799 |
| SRR8749028 | MeJA induced 9h | 4.809 |
| SRR8749029 | MeJA induced 9h | 0.781 |
| SRR8749030 | Uninduced | 0.292 |
| SRR8749031 | Uninduced | 1.505 |
| SRR8749032 | Uninduced | 0.932 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.402 |
| SRR8400027 | Control - Root | 1.380 |