Gene detail information of Glyur002625s00040102 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G16445.1 | 2.00E-72 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| NR | XP_004488782.1 | 1.14E-158 | PREDICTED: uncharacterized protein LOC101512353 isoform X2 [Cicer arietinum] |
| COG | YP_003709171.1 | 3.00E-40 | rRNA methylase [Waddlia chondrophila WSU 86-1044] |
| trEMBL | tr|I1MJB8|I1MJB8_SOYBN | 7.00E-158 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G41430.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02625 | 28212 | 32136 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002625s00040102.1 | PF06962.7 | rRNA_methylase | 149 | 290 | 8.90E-42 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.303 |
| SRR1783600 | control | 1.437 |
| SRR1783602 | moderate drought stress | 1.101 |
| SRR1811619 | moderate drought stress | 0.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.137 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.229 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.649 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.836 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.682 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.698 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.545 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.498 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.810 |
| SRR2868004 | Drought Stress (root) | 5.485 |
| SRR2967015 | Control (root) | 3.898 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.787 |
| SRR9715740 | Leaf | 4.862 |
| SRR9715741 | Leaf | 2.663 |
| SRR9715739 | Root | 1.348 |
| SRR9715742 | Root | 1.790 |
| SRR9715743 | Root | 1.329 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.661 |
| SRR8749028 | MeJA induced 9h | 2.258 |
| SRR8749029 | MeJA induced 9h | 1.463 |
| SRR8749030 | Uninduced | 1.185 |
| SRR8749031 | Uninduced | 0.210 |
| SRR8749032 | Uninduced | 0.477 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.087 |
| SRR8400027 | Control - Root | 6.116 |