Gene detail

Gene detail information of Glyur002622s00039569

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G47710.1	6.00E-136	Serine protease inhibitor (SERPIN) family protein
NR	XP_003523896.1	0	PREDICTED: serpin-ZX-like [Glycine max]
COG	YP_008149930.1	5.00E-57	hypothetical protein SCE1572_17565 [Sorangium cellulosum So0157-2]
Swissprot	tr\|Q9S7T8\|SPZX_ARATH	6.00E-174	Serpin-ZX
trEMBL	tr\|I1JTG3\|I1JTG3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G03860.1}

Sequence

Transcript Sequence

>Glyur002622s00039569.1
GTTATAAATTAAACATCTGGGTCGTCCCTTCTCTCTCAGTCCGTTCCAAATATGGACCTCCGTGAATCAATCAATAGCCAAACGGAAGTTTCCCTGAGTATCGCCAAGCATTTGTTCTCGAAAGAATCGAAGAACAGTGTGTTTTCGCCGCTATCACTGCACGTNGTGCTCAGTATAATCGCTGCTGGCTCCGAGGGTCCAACACTCAACCAGCTTCTCTCCTTCCTCCGATCCAAATCCACCGACAATCTCAACTCCTTCGCCTCTCAGCTCGTCGCCGTCGTCCTCTCCGATGCCTCCCCCTCCGGCGGGCCTCGCCTCTCCTTCGCCGACGGCTTGTGGGTTGAAAAGTCCCTTCCTCTTCACCCTTCCTTCAAACAACTGGTAGCCGCTGATTATAAGGCCACTCTTGCTTCAGTTGATTTCCAAACCAAGGCTGTTGAAGTGGCCAATGAGGTGAATTCATGGGCTGAAAAAGAGACAAATGGCCTTATTAANGATCTTCTTCCTCCCGCGTCAGTTGATAGTTCAACCAAGCTCATCTTTGCAAATGCGCTGTACTTCAAAGGAGCATGGAATGAGAAGTTTGATACTTCAACAACAAAAGACTACGATTTTCACCTTCTGAATGGTAGCTCGGTCAAGGTACCCTTCATGACCAGCAAGAAGAAGCAGTTCATTAGTGCTTTTGATGGCTTCAAAGTCCTCGGTCTTCCTTATAAGCGAGGAGAAGACAAGCGTCAGTTCTCTATGTACTTTTTTCTTCCAGATGCNAAAGGAGGACTGTCAGCATTGGTTGAACANGTGGCATCTGAATCCGGCTTCCTGGAACGCAAACTTCCTTATGAAAAAGTGGAAGTGGGTGACTTCAGGATTCCAAGATTCAACATTTCCTTTGGGTTTGAAGCTTCTGATGTGCTGAAGGAGTTGGGAGTGNTTTTGCCTTTCTCTGGTGGAGGTTTGACAAAATTGGCNGACTCTCCTATGGGTCAAAACCTTCATGTTTCCAACATATTTCACAAGTCTTTCATCGAAGTNAATGAAGAAGGCACTGAAGCTGCGTCTGCCAGTGCTGCAGTTGTAAAATTGAGGAGTATGCGTATTCCGACTCGGCTAGACTTTGTAGCTGACCACCCTTTCTTGTTTCTGATCAGAGAAGACTTAACCGGAACAGTACTCTTTATTGGGCAGGTGCTCAATCCTCTTGCTGAGTGATGTTATTAGAGACCATACTGGAGACAACAACATTGTTAACGACACTTATGCCCAATTATCATAAATTTGTAACAGTTTAACACCTGAGCTTTATTTGTAAANAGTATATATATATATATNNATCAGGGTTGTATATTTTTTGTTGCTAAGAGTTGTTACTCACGAGTGTCGAGGTCTTATGTAATGTAATCATCTCTTCTATGAGCTCAGTGGATAGATAAATACTGGAACTTCAATGCNGTAGTAAAATGGTAATAAAGTTGACAATGTGAATGTGGTTTGAGTATCTTGTTAATACATTTATCGTAGCTGATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02622	10728	13241	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005615 extracellular space

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002622s00039569.1	PF00079.15	Serpin	9	384	3.20E-99

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	94.757
SRR1783600	control	94.155
SRR1783602	moderate drought stress	72.214
SRR1811619	moderate drought stress	71.586

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	69.493
DRR006520	Root Summer glycyrrhizin high producing strain	69.298
DRR006521	Root Winter glycyrrhizin high producing strain	280.857
DRR006522	Root Winter glycyrrhizin high producing strain	273.994
DRR006523	Root Summer glycyrrhizin low producing strain	83.428
DRR006524	Root Summer glycyrrhizin low producing strain	83.475
DRR006525	Leaf Summer glycyrrhizin high producing strain	53.980
DRR006526	Leaf Summer glycyrrhizin high producing strain	54.327

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	49.189
SRR2868004	Drought Stress (root)	56.998
SRR2967015	Control (root)	58.355

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	46.172
SRR9715740	Leaf	33.424
SRR9715741	Leaf	39.669
SRR9715739	Root	60.344
SRR9715742	Root	63.691
SRR9715743	Root	67.013

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	35.908
SRR8749028	MeJA induced 9h	46.703
SRR8749029	MeJA induced 9h	30.015
SRR8749030	Uninduced	35.506
SRR8749031	Uninduced	32.815
SRR8749032	Uninduced	26.395

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	56.923
SRR8400027	Control - Root	39.974