Gene detail information of Glyur002618s00037134 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G10390.1 | 8.00E-72 | Histone superfamily protein |
| NR | NP_001238509.1 | 1.74E-89 | uncharacterized protein LOC100306416 [Glycine max] |
| Swissprot | tr|P68428|H32_WHEAT | 8.00E-92 | Histone H3.2 |
| trEMBL | tr|W5A3T1|W5A3T1_WHEAT | 5.00E-90 | Histone H3 {ECO:0000256|RuleBase:RU004471} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02618 | 15479 | 15958 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002618s00037134.1 | PF00125.19 | Histone | 58 | 132 | 3.50E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 39.537 |
| SRR1783600 | control | 28.917 |
| SRR1783602 | moderate drought stress | 19.748 |
| SRR1811619 | moderate drought stress | 19.285 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 35.546 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 36.868 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.467 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.067 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.670 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.395 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.358 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.709 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 149.242 |
| SRR2868004 | Drought Stress (root) | 69.000 |
| SRR2967015 | Control (root) | 69.005 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 28.401 |
| SRR9715740 | Leaf | 2.010 |
| SRR9715741 | Leaf | 6.709 |
| SRR9715739 | Root | 18.028 |
| SRR9715742 | Root | 5.247 |
| SRR9715743 | Root | 8.841 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 146.248 |
| SRR8749028 | MeJA induced 9h | 55.439 |
| SRR8749029 | MeJA induced 9h | 71.341 |
| SRR8749030 | Uninduced | 8.574 |
| SRR8749031 | Uninduced | 6.423 |
| SRR8749032 | Uninduced | 7.246 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 61.758 |
| SRR8400027 | Control - Root | 52.318 |