Gene detail information of Glyur002617s00040165 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G65680.1 | 1.00E-81 | expansin B2 |
| NR | NP_001238660.1 | 5.83E-176 | cytokinin induced message [Glycine max] |
| Swissprot | tr|Q9SHY6|EXPB2_ARATH | 8.00E-110 | Putative expansin-B2 (Precursor) |
| trEMBL | tr|Q39802|Q39802_SOYBN | 2.00E-176 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G16140.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02617 | 3335 | 5193 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002617s00040165.1 | PF03330.13 | DPBB_1 | 85 | 164 | 9.30E-16 |
| Glyur002617s00040165.1 | PF01357.16 | Pollen_allerg_1 | 177 | 260 | 1.10E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 39.467 |
| SRR1783600 | control | 40.063 |
| SRR1783602 | moderate drought stress | 2.523 |
| SRR1811619 | moderate drought stress | 2.580 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.439 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.162 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 48.745 |
| SRR2868004 | Drought Stress (root) | 2.017 |
| SRR2967015 | Control (root) | 2.730 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 13.192 |
| SRR9715742 | Root | 1.856 |
| SRR9715743 | Root | 3.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.995 |
| SRR8749028 | MeJA induced 9h | 1.021 |
| SRR8749029 | MeJA induced 9h | 5.729 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 151.617 |
| SRR8400027 | Control - Root | 30.633 |