Gene detail

Gene detail information of Glyur002616s00038220.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G14590.1	5.00E-126	Nucleotide-diphospho-sugar transferase family protein
NR	XP_004498201.1	0	PREDICTED: uncharacterized protein At4g15970-like [Cicer arietinum]
Swissprot	tr\|P0C042\|Y4597_ARATH	6.00E-102	Uncharacterized protein At4g15970
trEMBL	tr\|A0A072THA0\|A0A072THA0_MEDTR	0	Nucleotide-diphospho-sugar transferase family protein {ECO:0000313\|EMBL:KEH16338.1}

Sequence

Transcript Sequence

>Glyur002616s00038220.1
TCGCGNTCCTCTTTGTCGTTTTTACCATACGACACCGCACCACCGAAACATGACCTCACCGACGACACCAGATGTTGCCCCTCTCACACCCGCGCACGCTCCCTTCCTACCGGCGACGATCCCCGCCGACAACGCACCTCCACGCCGTCGGTAACTCCGCCGCCTCCATGTCGTCGGAATCCACCTCCATCCATCTCCGGCAGATCGTCGCCGCCGCGCTGTTACTTGCCGCCGTTTCCCTCTCCTGCCTGCTCCTCTTAAGAGACGCCGATTACTCTCTCTTCGCTTCCTCTTATCCCTTTCCCCGTTTTCCGACTGTTTTCCCGTTGGTTTCCAACGATTCCGCCACGTTTGGTGGTGCTCACATGGCTAGTGTTGCTCATGCTTTCCAGTTTCACCTCCACATACCTAGAGCATTGATAGTGGACAGATTGTTCCCTGGTAGCTGCAGCAGAGTTTCCATAATTAAGTCACTCTTTGGTCATATGAATATGGCTAGCAATGAATATCCACTAGAAAAAATTCTTAAAGAGGCTGCCATGGAAGACAGAACTGTTATCTTGACCACGTTAAATGAAGCATGGGCAGCACCAAATTCAGTCATTGATCTTTTCCTGGAGAGCTTTAGAATTGGGGATCGTACTCGTAGGCTCTTGAATCATTTAGTAATAATTGCATTGGACCAGAAGGCATTTATACGCTGTCAGGATATACACACCTATTGCTTTTTGCTTGTTAGCGAAGGTATTGAATTTAATGAAGAGGCATACTTTATGACTCCTCGCTACTTGAAGATGATGTGGAGAAGGATTGATTTCCTACGTTCTATTCTGGAGATGGGGTACAATTTTGTGTTCACAGATGCTGATATCATGTGGTTTAGGGACCCATTTCCACGGTTTCACCAAGATGCAGATTTCCAGATAGCTTGTGATCATTTCACAGGTAGCTTTGATGATGTACAGAACAGACCCAATGGCGGGTTCAACTTTGTGAAGTCCAATAATAGGTCAATAGAGTTTTACAAATTCTGGTACTCTTCACAAGAAACCTATCCTGGATACCACGATCAGGATGTCCTCAATTTCATCAAGGTTGACCCTTTCATTACTGATATAGGATTGAAGATGAAATTCTTGGATACAGCTAATTTTGGTGGGCTTTGTGAACCAAGTAGAGATTTAAATCAAGTTTGTACTATGCATGCAAATTGTTGCTATGGTATGGATAGTAAGCTTCATGATCTTAGAATTATGCTTCAGGACTGGAGACATTATTTGACCTTGCCTCCAAGTTTAAAGAGATTGTCAATTATTTCCTGGAGGGTTCCTCAGAAATGCAGCCTTGATTCTCTCAGGCCCGAGGGTTCACCAGAGAAGAGTGTTCAAGAAGAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02616	25399	28659	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT77

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002616s00038220.1	PF03407.11	Nucleotid_trans	194	392	1.70E-61

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.934
SRR1783600	control	9.065
SRR1783602	moderate drought stress	11.027
SRR1811619	moderate drought stress	10.826

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.927
DRR006520	Root Summer glycyrrhizin high producing strain	8.111
DRR006521	Root Winter glycyrrhizin high producing strain	14.636
DRR006522	Root Winter glycyrrhizin high producing strain	14.338
DRR006523	Root Summer glycyrrhizin low producing strain	11.219
DRR006524	Root Summer glycyrrhizin low producing strain	11.038
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.652
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.589

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.316
SRR2868004	Drought Stress (root)	11.386
SRR2967015	Control (root)	9.022

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.321
SRR9715740	Leaf	5.060
SRR9715741	Leaf	4.755
SRR9715739	Root	2.004
SRR9715742	Root	5.965
SRR9715743	Root	5.799

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.088
SRR8749028	MeJA induced 9h	6.930
SRR8749029	MeJA induced 9h	2.850
SRR8749030	Uninduced	10.824
SRR8749031	Uninduced	9.118
SRR8749032	Uninduced	5.922

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.700
SRR8400027	Control - Root	11.742