Gene detail information of Glyur002613s00038307 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G19020.1 | 1.00E-10 | chromomethylase 2 |
| NR | XP_007156278.1 | 4.04E-14 | hypothetical protein PHAVU_003G273100g [Phaseolus vulgaris] |
| Swissprot | tr|Q94F87|CMT2_ARATH | 2.00E-11 | DNA (cytosine-5)-methyltransferase CMT2 |
| trEMBL | tr|V7CDL5|V7CDL5_PHAVU | 2.00E-14 | Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02613 | 2354 | 4024 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00558 | DNMT1, dcm | EC:2.1.1.37 | Cysteine and methionine metabolism | map00270 |
| MicroRNAs in cancer | map05206 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.278 |
| SRR1783600 | control | 13.899 |
| SRR1783602 | moderate drought stress | 27.315 |
| SRR1811619 | moderate drought stress | 25.264 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.892 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.387 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 23.655 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 23.227 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.578 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.320 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.585 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.815 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.285 |
| SRR2868004 | Drought Stress (root) | 11.291 |
| SRR2967015 | Control (root) | 11.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.568 |
| SRR9715740 | Leaf | 13.562 |
| SRR9715741 | Leaf | 13.876 |
| SRR9715739 | Root | 3.304 |
| SRR9715742 | Root | 8.198 |
| SRR9715743 | Root | 8.942 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.751 |
| SRR8749028 | MeJA induced 9h | 10.724 |
| SRR8749029 | MeJA induced 9h | 10.942 |
| SRR8749030 | Uninduced | 9.355 |
| SRR8749031 | Uninduced | 7.261 |
| SRR8749032 | Uninduced | 6.850 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.391 |
| SRR8400027 | Control - Root | 30.467 |