Gene detail

Gene detail information of Glyur002611s00042330

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	1.00E-124	NB-ARC domain-containing disease resistance protein
NR	XP_003601846.1	0	Nucleotide binding site leucine-rich repeat disease resistance protein [Medicago truncatula]
COG	YP_007096318.1	5.00E-09	leucine-rich repeat (LRR) protein [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|Q7XA40\|RGA3_SOLBU	0	Putative disease resistance protein RGA3
trEMBL	tr\|G7J2J0\|G7J2J0_MEDTR	0	Disease resistance protein RGA4 {ECO:0000313\|EMBL:AES72097.1}

Sequence

Transcript Sequence

>Glyur002611s00042330.1
ATGGCTGACGCTTTACTTGGAATCGTGATTGAAAACCTCGGATCTCTTGTCCAAGAGGAGCTTGCAACGTTTTTGGGTGTTGGGGAACTGACCCAAAGGCTGTCCGGAAACCTCACTGCAATCCGCGCTGTCCTCAAAGATGCTGAGGAGAGGCAAATAACGAGTCGTGCTGTGAAAGACTGGCTGCAGAAGCTGAGAGATGCANCCCATGTTCTGGATGATATATTGGACGAATGTTCAATTGCATTCAGAGAAGACCGAGACAACAAGTGCATCACCCGTTTTCATCCAAAGGAGATTTTGGCTCGTCGGGACATCGCAAAGAGGATGAAAGAGGTTGCTAAAAGGATTGATGCTATTGCTGAAGAAAGGAACAAGTTTGAATTGCATGCTGTGGGAATCATGGAGAGCCAGCCAAAAGATGATGAATGGCGCCAAACTACCTCTGTCGTCATTGAACCGAAAGTTTATGGAAGAGACCAAGATAGAGAGCAGGTTGTCGAGCTTCTTATAATGCATGCCAGTGACAGTGAAGAACTCTCTGTTTTTCCCATTGTGGGCCATGGAGGGTATGGAAAAACAACACTTGCTCAATGGGTCTTCAATGACGAACGGGTGACTGGCCATTTTGACTTGAAAATCTGGGTTTGTGTTTCGGATGATTTCAGTCTGATGAAAATTCTACAATCCATCATAGAATCTACCACTGGAAAAACTCCCGGTGTCTCGTCTTTGGAATCAATGCAAAAAAAGGTTCAAGAAGTGTTACAGAGCAAAAGGTATTTACTTGCTCTTGATGATGTGTGGAATGAAGACCAAGAGAAATGGAATATGTTCAAGCATTTGTTGCAGCGTGGAAATGGAACGAAAGGTTCATCCATTTTGGTCACCACAAGACTTGAGACTGTTGCATCCATCATGGGAACTTGCCGTGCTCATCGTTTGGTAGGTTTATCTGAGGATGAAATTTGGCAATTGTTCAGACAACATGCTTTTGAACCAAACATGGAAGAGCGAGCAGAGCTTGTAGCAATAGGCAAGGAGATAGTGAGAAAATGTGTGGGTTCACCTCTTGCCGCCAAAGTACTAGGAAGCCTTTTGCGCTTTAAAAGTGCGGAACATCAATGGCTTTCCATAAAGGAAAGTAAACTATGGAATTTATTTGAGGATAAGGATAAGGATAATCGTATCATGTCGGTTCTGAGATTGAGCTACTTTAATTTGAAACTATCACTGAGGCCGTGTTTTTCCTTTTGTGCCATTTTTCCGAAAGATTTTGTGATGGTGAAGGAAACTCTAATTCATCTTTGGATGGCGAATGGATTTATTTTGTCCAGAGAAAACTTAGAGGTGGAGCATGTTGGTAACGAGGTGTGGGATGAATTATACCAGAGATCATTTTTTCAAGAAGTCGAAACTGATGAAGAAGGTAACGTTACATTCAAAATGCATGATTTAGTCCATGATCTTGCTCAGTCAATCGTGGAAGAAGAATGTGTGGCTTCCGAGGCTGCAAACTTGACTAATTTGTCAAGTAGAGTTCACCATATTGGTTGTTTATTAAATTATGGTCAAGGATTCAACTACAACACAATCCCTTTCAAGAAAGTTGAATCCTTGCAAACCTTTCTTGAGTTCGATCCACCCAACACAAATTTAAGTGCTTTGCCATCAATCACTCCTCTTCGAGTATTATGTACTAGTTCTTTTCAACTATCAGCATTGAAGAATCTAACTCATTTGAGGTTCTTGAAACTTTATAGAAGTAGCATCAAAACCTTGCCCCGGTCTGTTTGTAGGCTGAAGAAATTGCAAGTACTAAAACTAGAAAGCTGCCGTTATCTTTCTAGTCTTCCAAAGGAATTGACACAATTACAAGTGCTCAGGCATCTCATGATTAAAGATTGTAGGTCATTGGTATCAATGCCTTCCAAAATTGGGCAGTTAACATGTCTGAAAACATTAAGTATTTTCACTGTGGATTCAGAGGTGGGGTATGGTTTAGCAGAGTTACATGATTTACAACTTGGCGGCAAGCTACACATCAGAGGCCTTGAGAATGTGCTCAGTGACCTAGATGCAAGGGAAGCTAATTTGATTGGCAAAAGGGACTTAAATCGTTTATACTTGACGTGGGGAAGTAGTTCTAATTCACAAACTAATGCTGAGCGAGTACTCGAAGCCCTTGAGCCTTGCCCAGGTCTCAAGGGTTTTGGGATGAATGGTTACACGGGAATACATTTTCCCCATTGGATGAGAAACGGTTCTTTTCTAAAAGGCTTAGTTGATGTTATACTTTTTGATTGTAAAAACTGTCAACAACTTCCTCGACTTGGTAAATTACCATGTTTAACCACTCTTTTTGTATCTGGAATGAGAGATGTAAAATACATCGACGATGACTTATATGAACCTACTACCGAGAAGGCTTTTATGTCGTTGAAGACGTTGAATTTGCATGATTTACCAAAATTAGAGAGGATGTTGGAAGCCGAAGGAGTAGAGATGCTACCACAACTTTCCAACTTACGTATTTCAGGTCTCCCCAAGCTTGCATTGCCATCCCTTCCATCTGTTGTATCCCTTGATGCTAGCGGAAGAAATGAAGAGTTATTGAAGTCCCTTTTTGACTATCATTGTAATGATGACGTGGCTTCCTTCCCAGGGGGAATTGTGTGTAATATGCACAATCTTAAGAAACTTTCTATGGAACACTTCGATAAACTCAAGGAATTACCTAATGCACTCAGCACTCTTAGTGCCCTAGAGACGCTTTGCATTTCCAATTGTGGTGAAATCGAGTCTTTTTCGGAGCATGTGTTGCAAGGTCTGAGTTTTCTTCGAAGAATGACCATTTATGATTGCTGTAAACTCAAGTCTTTGTCCGAAGGTATGGGACACCTAACTCGTCTTGAGAGACTTCTCATCGAGAACTGTCCACTACTCGTTTTACCAAGCAATATAAATAGGCTAACTGCTCTTTGTGATGTGAGAATCTGGGGAAGGCGTGAAAGCAACAAGTTACCAGAGGGCTTAGAATGTCTCTCCTCCGTGCAAATCTTGTGTCTGTTAGACTTTCCTTCTCTAACATCCTTGCCAGACTGGTTGGGAACCATCACTTCTCTTCAAAAATTAAGAATTAGATGGTGTCCCGAGCTAAGGTCATTACCAGATAGCTTTCAACAACTCAGAAACTTGCGTGAATTACATATTTCTGAATGCCCTAAGCTGGTGAAGAGATGTAGCAAGGAAACAGGGGAAGATTGGCATAAGATAGCTCACGTTCCTGAATTGGAATTGGAGCAAGTGAAGGAACCGACTTCTTGTGTGATCAACTTAATAACCCCAAGTGCTGTAATAGCTCCCTGTGTATATTATGCGAGCCGCAAAGATTTG

Protein Sequence

>Glyur002611s00042330.1
MADALLGIVIENLGSLVQEELATFLGVGELTQRLSGNLTAIRAVLKDAEERQITSRAVKDWLQKLRDAXHVLDDILDECSIAFREDRDNKCITRFHPKEILARRDIAKRMKEVAKRIDAIAEERNKFELHAVGIMESQPKDDEWRQTTSVVIEPKVYGRDQDREQVVELLIMHASDSEELSVFPIVGHGGYGKTTLAQWVFNDERVTGHFDLKIWVCVSDDFSLMKILQSIIESTTGKTPGVSSLESMQKKVQEVLQSKRYLLALDDVWNEDQEKWNMFKHLLQRGNGTKGSSILVTTRLETVASIMGTCRAHRLVGLSEDEIWQLFRQHAFEPNMEERAELVAIGKEIVRKCVGSPLAAKVLGSLLRFKSAEHQWLSIKESKLWNLFEDKDKDNRIMSVLRLSYFNLKLSLRPCFSFCAIFPKDFVMVKETLIHLWMANGFILSRENLEVEHVGNEVWDELYQRSFFQEVETDEEGNVTFKMHDLVHDLAQSIVEEECVASEAANLTNLSSRVHHIGCLLNYGQGFNYNTIPFKKVESLQTFLEFDPPNTNLSALPSITPLRVLCTSSFQLSALKNLTHLRFLKLYRSSIKTLPRSVCRLKKLQVLKLESCRYLSSLPKELTQLQVLRHLMIKDCRSLVSMPSKIGQLTCLKTLSIFTVDSEVGYGLAELHDLQLGGKLHIRGLENVLSDLDAREANLIGKRDLNRLYLTWGSSSNSQTNAERVLEALEPCPGLKGFGMNGYTGIHFPHWMRNGSFLKGLVDVILFDCKNCQQLPRLGKLPCLTTLFVSGMRDVKYIDDDLYEPTTEKAFMSLKTLNLHDLPKLERMLEAEGVEMLPQLSNLRISGLPKLALPSLPSVVSLDASGRNEELLKSLFDYHCNDDVASFPGGIVCNMHNLKKLSMEHFDKLKELPNALSTLSALETLCISNCGEIESFSEHVLQGLSFLRRMTIYDCCKLKSLSEGMGHLTRLERLLIENCPLLVLPSNINRLTALCDVRIWGRRESNKLPEGLECLSSVQILCLLDFPSLTSLPDWLGTITSLQKLRIRWCPELRSLPDSFQQLRNLRELHISECPKLVKRCSKETGEDWHKIAHVPELELEQVKEPTSCVINLITPSAVIAPCVYYASRKDL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02611	32873	37016	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002611s00042330.1	PF00931.17	NB-ARC	163	445	3.80E-72

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.769
SRR1783600	control	1.424
SRR1783602	moderate drought stress	1.220
SRR1811619	moderate drought stress	1.266

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.405
DRR006520	Root Summer glycyrrhizin high producing strain	2.571
DRR006521	Root Winter glycyrrhizin high producing strain	0.145
DRR006522	Root Winter glycyrrhizin high producing strain	0.159
DRR006523	Root Summer glycyrrhizin low producing strain	2.124
DRR006524	Root Summer glycyrrhizin low producing strain	2.140
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.185
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.350

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.862
SRR2868004	Drought Stress (root)	2.781
SRR2967015	Control (root)	2.883

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.449
SRR9715740	Leaf	0.160
SRR9715741	Leaf	0.144
SRR9715739	Root	0.296
SRR9715742	Root	0.536
SRR9715743	Root	0.246

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.434
SRR8749028	MeJA induced 9h	0.442
SRR8749029	MeJA induced 9h	0.028
SRR8749030	Uninduced	0.132
SRR8749031	Uninduced	0.057
SRR8749032	Uninduced	0.028

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.304
SRR8400027	Control - Root	2.799