Gene detail

Gene detail information of Glyur002609s00041418

Functional Annotation

Database	Orthologs	E value	Annotation
NR	XP_003542517.1	0	PREDICTED: glucan 1,3-beta-glucosidase A-like [Glycine max]
COG	YP_002354525.1	5.00E-41	glucan 1,3-beta-glucosidase [Thauera sp. MZ1T]
trEMBL	tr\|I1LW02\|I1LW02_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G02000.1}

Sequence

Transcript Sequence

>Glyur002609s00041418.1
CAACATGGTATAGTACGGGTGGTATATAATAGATTCCTTAAGCACGATGTTCCGAGAAAAAATAATTATTACTCACTTAGTTTCAGAAACGTTGTCGGATTAGTCTACGTACGTTGTTCTTTTTATATATCCACATTTCAAATCATGAGGTATATATGAGGGNTTTTAGACAAAAATCAAACACACACATCTAAAGATGACGAGCTGGGTCAACCTCAAAACACGGCTTCTTAGCTTGGTTACCTTTTGTAGCATGCTTTCCTTGTCCTTCGGAAGCCAGAACACCCAGTTTCGAGTGAGAGCAGTGAATCTTGGGGGATGGCTGGTTACTGAAGGTTGGATGAAACCTTCCCTCTTCGATGGCATTCCAAATAAGGACTTCTTGTTCAAGTCAGTGACAACAGGGAAATATCTCTGTGCAGAGTCCGGTGGAGGAACTATCCTTGTTGCAAACGGCACAGCTGCTTCGGGTTGGGAAACATTTAGATTGTGGAGGATAAACGAGGTTACTTTCAGATTCAGGGTGTTCAAGAAACAGTTTGTGGGGTTAGATGGGATTAACGTGGTTGCTGTGTCCAATAACTCCACTGATTCTGAAACGTTTCATATTGTTAAGCAAAGTGGCAATTCAAGCCGTGTTCGAATCAAAGCATCGAATGGATACTTCTTGCAGGCNAAGACAGAGGAAGTGGTGACAGCTGATGTTTCAAAGGTTAGAGGATGGGGAGATGATGACCCTACTGTTTTTGTGATGACAATCGCTGCAATGATGCAAGGCGAATTCCAAGTGACAAATGGTTATGGGCCCAGGAAAGCTCCTCAAGTGATGAAGGAACATCGGAACACTTTCATTGTCGAGGATGATTTTAAGTTCATAGCCAGTAATGGATTAAATGCTGTTAGAATTCCCGTTGGCTGGTGGATCGCAAGTGACCCAACTCCACCCTCACCTTATGTTGGAGGCTCCTTGAAAGCACTAGACAATGCCTTCTTGTGGGCAGAGAAATATGGACTGAAAATCATCATTGATCTTCATGCTGCACCCGGTTCTCAAAATGGCTATGAGCACAGCTCTTCAAGAGATGGTTCTCAAGAATGGGGAAAATCAGATGAAAACATCCAACAAACAGTTCATGTTATAAACTTCCTAACTGCAAGGTATGCAAAAAGCCCAAGCCTTTATGCAGTTGAGCTTTTAAACGAGCCCCGTGGTGAGGGTGGTGTGACACTAGAGAGGTTGAACAAGTACTACAAGGCTGGTTATGAAGCTGTGCGCAAGCACTCTTCCACTGCTTATGTGGTTTTGTCAAATAGGCTAGATTCCTCGGAGCCTAGGGAACTCTTGCCTCTAGCCAATGGCCTTATGCGATCTGTGATTGATGTCCACTATTACAGCATCTTTGGCGATGTATTTCACAACATGACTGTCCAACAGAACATTGATTTCATTAAAACCAACCGCTCATCAGAGTTGAATTCTGTGACATCCTCAAATGGCCCTCTTATTTTTGTCGGTGAATGGGTTGCGGAGTGGCAAGTTAAAGGAGCGACAAAAGAAGACTACCAAAGATTCGCGCAGGCCCAATTAGATGTTTTTGGGCGAGCAACATTTGGATGGGCTTATTGGGCTTTCAAGAACATCAACAACCACTGGAGTCTGGAGTGGATGATCAAGAATGGTTATATCAAGCTTTAGATTTTTTTTAATGACCAAAAAAAAAAAAGCTTTAGATTTTGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02609	22805	31117	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0007015 actin filament organization

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0051015 actin filament binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002609s00041418.1	PF00150.13	Cellulase	217	481	3.10E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.336
SRR1783600	control	0.345
SRR1783602	moderate drought stress	0.564
SRR1811619	moderate drought stress	0.509

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.965
DRR006520	Root Summer glycyrrhizin high producing strain	2.680
DRR006521	Root Winter glycyrrhizin high producing strain	1.560
DRR006522	Root Winter glycyrrhizin high producing strain	1.238
DRR006523	Root Summer glycyrrhizin low producing strain	1.453
DRR006524	Root Summer glycyrrhizin low producing strain	1.589
DRR006525	Leaf Summer glycyrrhizin high producing strain	32.453
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.298

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.051
SRR2868004	Drought Stress (root)	28.183
SRR2967015	Control (root)	45.767

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	132.884
SRR9715740	Leaf	155.950
SRR9715741	Leaf	159.887
SRR9715739	Root	1.831
SRR9715742	Root	4.568
SRR9715743	Root	2.634

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.426
SRR8749028	MeJA induced 9h	70.170
SRR8749029	MeJA induced 9h	44.570
SRR8749030	Uninduced	17.283
SRR8749031	Uninduced	13.698
SRR8749032	Uninduced	29.913

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.061
SRR8400027	Control - Root	2.554