Gene detail

Gene detail information of Glyur002606s00033938

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G22860.1	8.00E-105	Cell cycle regulated microtubule associated protein
NR	XP_004511630.1	0	PREDICTED: protein TPX2-like isoform X2 [Cicer arietinum]
Swissprot	tr\|F4I2H7\|TPX2_ARATH	1.00E-38	Protein TPX2
trEMBL	tr\|K7K539\|K7K539_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G42300.3}

Sequence

Transcript Sequence

>Glyur002606s00033938.1
ATGAAGAGCGATGGTGGTGGTGGGTGGCGGCAAGAGGTGGTGGTGATGGAAATAGAGCATCAGGTGTTTGGTGGTGGCGATGAGATTGACCTGGATTACGAGTTTGATGCGGCTCGCTTCTTCGATTTCAGTGCACCGGAAACTCTCGCTCAAGCTAGCCAAGCCGAACTCTGGTTCGAAACCGCAGGAAGCTGCTCTCCTTCTCCTTTTGTGGCAAATCTAGTGCTGAGGGAGGAAGACGTTAGCGCAACCGCCCTCCGTGATCCCAAACCTAATGTTTTTCAGCATCATTATGGTTCAAAAGCAGTGGGTGGGAGTGGGAACACCAACATCTCTGGATTTCTGGGAGGAGTTCTCCAAAATGTTGCTATGCAACCAGGACTGACCTTTAACAGCAAGACAATCAGTGGCGGTTTGAATTCTAAGGCTAAATCTGCTGTGGCGAAGGGTTCAACACTAATGAAACCCACAGCTAGTCAGTTGGCTAAGCAAAACCGGCCCCCTCAAATTGTTGGCTCAAGGTTTCAGAAGGTGCAAGCTCATAACAAGGAAATTAATTTGTCTAACTCTTCTNGGATGGAGAGTCAAGCTGCCAAGCGGCAGAAATTAGAAGGTGGTCTCTTGCGCAAGGTTGGTGATGTGAAGCAGCAAGCTAATTTTGTCCATAAGGCACCGAAGAAGGTTGAAACTCTTGATCAAAACTCTGGATATTCCAAGCTTAGGATAACTATTCCTAGAGAGCCAGACCTAGAAACAGCGCATAGAGCACAAAGGATTAGACCCAAAAATGCTGCAGAGGCAGAACTGGTGACAGTGGCTGCCCCCAGATTCAAAGCCCGCCCGTTAAACAGAAAAATTCTTAATGCTCCTTCACTGCCACTTCCTAAGAGGAGCACTCCACGGTTGCCAGAATTTCAAGAATTTCACCTCAAGACATGGGAGAGGGCCATGCAGCATACATATGCTACTTCATCATCTACACTTCGATGCGATGATTCTGATAAGGATTTGGACAAACATACTACTGTTTCTGCTCCAGAAAATAAAGTCAGNGATTTAAGAAGGCCATCTGCCATGGGTGCTCCAAAGCATGATGTATTGGATTGTGCACATAATTTTAAAGCTCGGCCACTTAATAAGAAGGTACTTGCAAGTAAAGGAGATATTGGTGTTTTCCGGAACATTAAGCAGGAAACCACCGTGCCAGCGGAATTTAATTTCCATACAGAAAAGAGGGTTCAAAATAACCCGCCAATTGAACTCTTTAGTAAGCTATCCCTAACATCTGAAATTCAGTCAAATAATGGATCTCAGTTGAAACTGCCTTCGCATTTCAGGGTGTTCAAAAAGGAAAAGCCTTTCATATTTGGGGGAAATCAAATTCATAATGGGAGTGACGGTTGCATCAGCGAAGCTGGTACTCCGTTTAGAGCAAGGAGGAGCTTGGGAATTCGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02606	4556	9992	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007067 mitotic nuclear division

cellular_component

GO:0005819 spindle

GO:0005874 microtubule

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002606s00033938.1	PF12214.3	TPX2_importin	239	407	5.00E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.156
SRR1783600	control	1.372
SRR1783602	moderate drought stress	0.705
SRR1811619	moderate drought stress	0.744

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.053
DRR006520	Root Summer glycyrrhizin high producing strain	1.147
DRR006521	Root Winter glycyrrhizin high producing strain	0.104
DRR006522	Root Winter glycyrrhizin high producing strain	0.121
DRR006523	Root Summer glycyrrhizin low producing strain	0.552
DRR006524	Root Summer glycyrrhizin low producing strain	0.570
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.025
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.714

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.534
SRR2868004	Drought Stress (root)	2.215
SRR2967015	Control (root)	3.633

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.311
SRR9715740	Leaf	1.328
SRR9715741	Leaf	0.598
SRR9715739	Root	0.066
SRR9715742	Root	0.134
SRR9715743	Root	0.373

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.431
SRR8749028	MeJA induced 9h	3.374
SRR8749029	MeJA induced 9h	3.814
SRR8749030	Uninduced	0.299
SRR8749031	Uninduced	0.144
SRR8749032	Uninduced	0.241

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.364
SRR8400027	Control - Root	2.525