Gene detail information of Glyur002602s00031758 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G48250.1 | 5.00E-42 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_004515902.1 | 1.88E-84 | PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like [Cicer arietinum] |
| Swissprot | tr|Q9STK5|PP269_ARATH | 5.00E-48 | Pentatricopeptide repeat-containing protein At3g48250, chloroplastic (Precursor) |
| trEMBL | tr|A0A072URS9|A0A072URS9_MEDTR | 9.00E-78 | PPR containing plant protein {ECO:0000313|EMBL:KEH31768.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02602 | 36931 | 37702 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002602s00031758.1 | PF01535.15 | PPR | 88 | 115 | 0.19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.643 |
| SRR1783600 | control | 0.482 |
| SRR1783602 | moderate drought stress | 1.200 |
| SRR1811619 | moderate drought stress | 1.553 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.950 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.216 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.595 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.818 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.088 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.160 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.714 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.747 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.338 |
| SRR2868004 | Drought Stress (root) | 1.862 |
| SRR2967015 | Control (root) | 1.902 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.331 |
| SRR9715740 | Leaf | 0.286 |
| SRR9715741 | Leaf | 0.362 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 1.155 |
| SRR9715743 | Root | 1.132 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.549 |
| SRR8749028 | MeJA induced 9h | 1.986 |
| SRR8749029 | MeJA induced 9h | 0.406 |
| SRR8749030 | Uninduced | 0.206 |
| SRR8749031 | Uninduced | 0.622 |
| SRR8749032 | Uninduced | 0.790 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.159 |
| SRR8400027 | Control - Root | 2.845 |