Gene detail information of Glyur002602s00031753 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G48250.1 | 8.00E-131 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_003550712.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like [Glycine max] |
| Swissprot | tr|Q9STK5|PP269_ARATH | 7.00E-165 | Pentatricopeptide repeat-containing protein At3g48250, chloroplastic (Precursor) |
| trEMBL | tr|I1MTC3|I1MTC3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G09180.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02602 | 24872 | 26629 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002602s00031753.1 | PF01535.15 | PPR | 265 | 294 | 0.035 |
| Glyur002602s00031753.1 | PF01535.15 | PPR | 340 | 363 | 0.16 |
| Glyur002602s00031753.1 | PF01535.15 | PPR | 376 | 401 | 0.44 |
| Glyur002602s00031753.1 | PF01535.15 | PPR | 443 | 471 | 0.73 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.414 |
| SRR1783600 | control | 1.376 |
| SRR1783602 | moderate drought stress | 1.303 |
| SRR1811619 | moderate drought stress | 1.331 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.682 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.923 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.696 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.877 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.378 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.524 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.909 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.842 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.142 |
| SRR2868004 | Drought Stress (root) | 2.673 |
| SRR2967015 | Control (root) | 2.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.935 |
| SRR9715740 | Leaf | 0.884 |
| SRR9715741 | Leaf | 1.001 |
| SRR9715739 | Root | 2.149 |
| SRR9715742 | Root | 3.958 |
| SRR9715743 | Root | 3.610 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.406 |
| SRR8749028 | MeJA induced 9h | 2.534 |
| SRR8749029 | MeJA induced 9h | 1.098 |
| SRR8749030 | Uninduced | 0.515 |
| SRR8749031 | Uninduced | 0.526 |
| SRR8749032 | Uninduced | 0.009 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.977 |
| SRR8400027 | Control - Root | 4.035 |