Gene detail information of Glyur002602s00031748 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G05850.1 | 9.00E-110 | plant intracellular ras group-related LRR 1 |
| NR | XP_004515868.1 | 0 | PREDICTED: leucine-rich repeat protein soc-2 homolog isoform X1 [Cicer arietinum] |
| COG | YP_723316.1 | 3.00E-27 | small GTP-binding protein [Trichodesmium erythraeum IMS101] |
| Swissprot | tr|Q9FFJ3|PIRL1_ARATH | 8.00E-150 | Plant intracellular Ras-group-related LRR protein 1 |
| trEMBL | tr|A0A072UPM3|A0A072UPM3_MEDTR | 0 | Plant intracellular ras group-related LRR protein {ECO:0000313|EMBL:KEH31784.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02602 | 375 | 7930 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002602s00031748.1 | PF13855.1 | LRR_8 | 262 | 319 | 2.60E-06 |
| Glyur002602s00031748.1 | PF13855.1 | LRR_8 | 330 | 390 | 1.30E-10 |
| Glyur002602s00031748.2 | PF00564.19 | PB1 | 27 | 99 | 1.40E-16 |
| Glyur002602s00031748.3 | PF00564.19 | PB1 | 27 | 99 | 8.10E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.183 |
| SRR1783600 | control | 5.816 |
| SRR1783602 | moderate drought stress | 2.512 |
| SRR1811619 | moderate drought stress | 3.570 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.315 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.746 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 118.848 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 115.140 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 55.597 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.380 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.148 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.832 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.024 |
| SRR2868004 | Drought Stress (root) | 1.303 |
| SRR2967015 | Control (root) | 4.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 74.719 |
| SRR9715740 | Leaf | 24.437 |
| SRR9715741 | Leaf | 82.302 |
| SRR9715739 | Root | 17.203 |
| SRR9715742 | Root | 31.087 |
| SRR9715743 | Root | 28.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.336 |
| SRR8749028 | MeJA induced 9h | 0.693 |
| SRR8749029 | MeJA induced 9h | 0.863 |
| SRR8749030 | Uninduced | 0.560 |
| SRR8749031 | Uninduced | 1.949 |
| SRR8749032 | Uninduced | 0.470 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.684 |
| SRR8400027 | Control - Root | 6.265 |