Gene detail

Gene detail information of Glyur002600s00039903

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07040.1	5.00E-86	NB-ARC domain-containing disease resistance protein
NR	KEH33986.1	0	LRR and NB-ARC domain disease resistance protein [Medicago truncatula]
COG	YP_005320665.1	3.00E-10	putative lipoprotein [Saprospira grandis str. Lewin]
Swissprot	tr\|Q39214\|RPM1_ARATH	5.00E-111	Disease resistance protein RPM1
trEMBL	tr\|A0A072UX30\|A0A072UX30_MEDTR	0	LRR and NB-ARC domain disease resistance protein {ECO:0000313\|EMBL:KEH33986.1}

Sequence

Transcript Sequence

>Glyur002600s00039903.1
ATGTGTGATCCTGTACTGTCCCTAGCTGGAAAATATTTGCTTCCACTGTTATTGGAAGCACGGGTTATGATAAGGGGTGTTCCAAGAGAAGTTGCAGACTTGAAAGCTGAACTAGAAAGCATTGAAGACTTCATCAACGAAGCTGAAAAAGGCAACACANGTGACGAAATAAAAAAAAAGGTGAAGCAGCTGAGAGAAGCCGCTTTTCTCATAGAAGATGTCATTGAGGAATACGAGNCCTATGAGGGACAAGATGCTCATGATCCTGGATGCGCAGCTGCTGTTGAGTTGGTCAAAACTGTGATTCTCCCTCTTCAAATAGCGTTCAAGATTCGGAACATCGAATCACGAATTGGTGGAATGAAGGATACAAATGGAAGTTATGGCTCCCAAATCCAACCTTCTTCAGGACAAGGATCAAGCAGTTCTACAGCAAATCGAAATGCCGCATTATTGCAAAACCTCCAAGAGGCTCCTCTTTTCATTGCCGAAGCTGATGTTGTCGGCTTTGAAGCCCAAAGTGATGAATTGGTTGGTTGGTTGGTAGATGGAAGTGAAATACGCACTGTCATCTCTGTGGTAGGAATGGGAGGACAGGGTAAAACCACTCTTGCCAAGAAAGTTTATGACTGCAAGGAGGTCACTATGCACTTTAATTGTCGTGTATGGATCANAGTGTCTCAATCATACACATACACAAGAGAAGGGTTGTTAAGGGACATGTTGCGCGAGATTCACAAAGAAACAGGAACATCTCCTCCTCAGGATATTTTTCAAATGGATCGAGAGTCATTGATTCGAGAAGTGAGAAACGGCTTGCAAAAAACGAGGTACGTTATTGTGTTTGATGACGTATGGAGTACAGATTTTTGGAGTGATATTGAACATGCTGTNATTGATAATAAAAATGGAAGCAAGATATTACTCACAACAAGGAATTTGGATGTTGCCGAGTTTTGTAAGAGATCTTCTTTCGTTAAAGAGCATGCGCTGCAATGTTTAACTAAAGAACCATCTCTGAAGCTGTTCAATAAGAAGGCATTCTTTGGCTTGAATGGATATTGTCCGGAACATCTTCTGAGTATATCTTCTGCAATTGTTGACANATGTAAGGGTTTACCACTAGCAATTGTGGTCATTGGTGGTCTTTTATCTGGCATAGATCCATCTGATCAACCTCAATGGCAGAGATTTAGTGAAAATCTAAGTTCAGAGCTGAATAAGGTTTCATCTTTAAGTGNGACAATAAGACACATTTTGGGTTTCAGTTACAATGATTTGCCTCCCCNTCTTAAGTCATGCTTCTTGTATTTTGGAATATATCCTAAAGACTATGTAGTTGAATTAGAGAGGTTGTTTCAACAGTGGATAGCTGAAGGGTTTGTGAAAGAGGAAGGGGACAAGACTCTGGAAGAAGTTGCAGAAGGATATCTGACGCAGTTGATCCATAGAAATTTGGTGCAAGTATCTTCAATTAGCGTTGGTGGAAAAGCAAAACGTTGCCGTGTTCATGATCTATTACGCATGCTGATCCTTGAAAAATTTGAAGATTCAAGTTTTTGCCATAATATTAGTGAAGATGGTCAGTCATCCTTAAGTGGAATAATTCGGCGCCTATCAATAGCAACCACTTCTACTGATTTAATGGCAAGTATTGAAAGCCCACATGTTCGGTCACTGCTTGTTTTCACAGATGAAGCAGACTTCATATCTGAATACTTTGTTAGGAGAATCACTACAACATACNAGCGGTTGAGAGTGCTTGATGTTCAAGGTAATTTGNCTAATTTTCCTAAAAATTTAGGAAATTTGATCTACTTGAAGTATTTAAGATTCAGGTGTGCACAGATGAGGGAACTTCCAAAATCCATTGGCATGCTCCAGAATCTGGAGACCTTGGATATAAGCGGTACAGGTTACTGTGAGATGCCAAAGGAGATTAGTAAGCTTAGAAAGCTACGTCATCTTCTATGCCAAAATATGTCTTTGACTCAATTGAAGGATGATATTGGANGTATGACGGCCTTACAAACACTACTTTTTGTTGGATTAGATGGAGATGGTGATGGAGTAGTAAGGCTAATCATTGAGCTAGGAAAACTAAAGCAGTTAAAGGAATTGGGCTTGAGAGATGTTAGGGGGGAACATGGGAGCACTATATTTTTCTCAGTAAATGAGATGCAACAGTTGCAGAAGCTAGATATTCAATCAAGTTCAACATATGATGAAGTCATTGATTTGCATTTGATTCCATCCCCACCTAAACTTCGCAAGCTTAGACTGAANGGCAAGTTAGAGAAGTTGTCAGAGTGGATTCCAGGGCTTCAAAATCTAGTTAAGTTGACTTTGATATCCTCTCGGTTAATTGATGATCCAATGGAAACACTAAAAAATATGCAGAACTTGTTGTCCCTCACTCTCATTGATGCTTATGAAGGTGAAACTATACATATTCAAGAAGGAGGTTTTCAGAAATTGAGGAGGTTGTCCCTTAAAGAGTTGAATAACCTGAATTCTATCATTATCGACAAAGGAGCACTACATTCTCTGACAATGCTTAAGTTATCGAGGAACTCCCGACTCAGGACGGTACCCACCGGCATCCAACACTTGAGGCATCTTGAAGTTCTTAATATTTACCATATGCCACCTGCATTTGTGCGAGACATTGATTCTGATAGAGGAAAAGAACACCCGATCAAGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02600	33289	35994	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002600s00039903.1	PF00931.17	NB-ARC	171	465	2.90E-70

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.948
SRR1783600	control	6.788
SRR1783602	moderate drought stress	13.362
SRR1811619	moderate drought stress	13.365

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.324
DRR006520	Root Summer glycyrrhizin high producing strain	1.446
DRR006521	Root Winter glycyrrhizin high producing strain	2.707
DRR006522	Root Winter glycyrrhizin high producing strain	2.571
DRR006523	Root Summer glycyrrhizin low producing strain	0.634
DRR006524	Root Summer glycyrrhizin low producing strain	0.776
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.778
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.719

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.135
SRR2868004	Drought Stress (root)	6.324
SRR2967015	Control (root)	6.107

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.070
SRR9715740	Leaf	0.728
SRR9715741	Leaf	2.785
SRR9715739	Root	0.302
SRR9715742	Root	3.458
SRR9715743	Root	2.735

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.368
SRR8749028	MeJA induced 9h	1.774
SRR8749029	MeJA induced 9h	0.560
SRR8749030	Uninduced	1.557
SRR8749031	Uninduced	1.437
SRR8749032	Uninduced	1.530

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.900
SRR8400027	Control - Root	3.764