Gene detail information of Glyur002600s00039899 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17680.1 | 9.00E-125 | disease resistance protein (TIR-NBS-LRR class), putative |
| NR | XP_003607620.1 | 0 | Tir-nbs-lrr resistance protein [Medicago truncatula] |
| COG | YP_007098491.1 | 2.00E-12 | Leucine Rich Repeat (LRR)-containing protein [Chamaesiphon minutus PCC 6605] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 5.00E-131 | TMV resistance protein N |
| trEMBL | tr|G7JCP8|G7JCP8_MEDTR | 0 | Disease resistance protein (TIR-NBS-LRR class), putative {ECO:0000313|EMBL:AES89817.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02600 | 14554 | 18795 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002600s00039899.1 | PF01582.15 | TIR | 21 | 153 | 2.50E-34 |
| Glyur002600s00039899.1 | PF00931.17 | NB-ARC | 204 | 462 | 6.20E-37 |
| Glyur002600s00039899.1 | PF00560.28 | LRR_1 | 592 | 611 | 1.2 |
| Glyur002600s00039899.1 | PF13855.1 | LRR_8 | 708 | 762 | 2.40E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.011 |
| SRR1783602 | moderate drought stress | 0.012 |
| SRR1811619 | moderate drought stress | 0.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.292 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.216 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.326 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.215 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.476 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.231 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.848 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.846 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.300 |
| SRR2868004 | Drought Stress (root) | 4.696 |
| SRR2967015 | Control (root) | 3.900 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.016 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.702 |
| SRR8400027 | Control - Root | 0.180 |