Gene detail

Gene detail information of Glyur002599s00039033

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G27110.2	4.00E-128	Peptidase family M48 family protein
NR	XP_003547648.1	0	PREDICTED: uncharacterized protein LOC100776801 isoform X1 [Glycine max]
COG	YP_007132547.1	1.00E-102	peptidase M48 Ste24p [Stanieria cyanosphaera PCC 7437]
trEMBL	tr\|V7CU86\|V7CU86_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW33727.1}

Sequence

Transcript Sequence

>Glyur002599s00039033.1
CGGAAAGTCAACTAATCGACAATGAAGTGGCGCGAAACGGGTACCATAGGTACGGCTGTGGCCTCAACTTGCCCTACGTTTACCACGATCCTAAAAAATCAAAGCCCCAAATAATCCTAATGATATGGCCATGCTCACGGTGTGCACTGCGCACCCCATTTGCCCCTCTTCCAAACACAATCCCGAAGCTAACACGCACTTCTTCGATGGCTTCCGTGCCTTTCACCACTCTCTGCCTCTCTCACAAACCGACTGCACTCACCTCCGGCTTCGGACTCCTAGCTTCGGACAGATTTAGGTTCGGTGGCGGTTCGGCGATCCGGTTCGAGAGGGTTCAGAAGAACCGAAGGCTCGGAATCCCCGTTTGCAGAGCTGGTTCCGCTGTTGTTGCCTTTCGAGACCTTGACGCCGACGATTTTCGTCACCCTCTTGATCAACAGTTACTTAAGTTGCTCTATGACATGGTTCTCTTTAAATGNGTTGCAGGAACTGTAGCAGAGCAGGTCATGCTCCTTGAGAACATAGGGACATCTGTCCTTGTTTCTAAAAATCAGCTTCCCGATCTNCACCACTTAATGGTTGAAGCTGCACAAATATTAAATGTTGATGCCCCGGATCTATATGTTCGTCAAAGTCCNGTCCCAAATGCATACACATTAGCTATAAGTGGTAAACGACCATTNGTTGTTGTTCATACTAGCCTTGTGGAGCTCCTGACAAGAGCAGAGTTCCAGGCTGTTTTGGCTCATGAGTTGGGTCACCTNAAATGTGATCATGGTGTGTGGCTTACATATGCAAATATTCTAACCCTTGGAGCCTATACTGTACCTGGCATTGGTGGTATGATAGCTCGGACTCTGGAAGAGCAGTTATTTCGCTGGCTTCGAGCAGCTGAGTTGACCTGTGATCGAGCAGCTCTTCTTGTTGCTCAAGACCCTAAGATCGTCATCTCTGTCCTCATGAAATTAGCTGGTGGCTGCCCATCATTGGCTGATCAACTAAATGTGGATGCATTCCTGGAGCAAGCTCGCTCTTATGAAAAAGCTGCTTCCAGCCCAGTTGGGTGGTACATAAGGAATGCACAAACAAGGCAATTGTCACATCCTCTGCCTGTTCTACGTGCTAGTGAAATTGATGAATGGTCAAAAAGTCCAGCTTACAGATCTCTTTTGAAACGAGGAATGCCTATGAGACCACAACNACAAAATGTCTAGCAGTGTCCACATGGGTATTGTTCAAAATGCATAACAGCTCAAGGTTCTTCCTGGGTACCAGATGATCAAAAGGGGTCGGAAAGCATTAAGATTTATTTATTATGGATCTTCGGCTGCTGGAAAGCACTTACCTCATACTAATACTGTAAATCAGTAAATCTACAGATGTATATTCACTGTAATTGTTATATAAGTCAAATTGTAAGTAGAATTTTGATGACAAAGGGGATTATTATTTCTAGGAATGTTGGCCTTTCGAAGGTTAGGAACTCTTCTATGCAAGTTTTATAATTGAAAAATTGTGTTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02599	22335	34667	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

cellular_component
GO:0016020 membrane

molecular_function
GO:0004222 metalloendopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002599s00039033.1	PF01435.13	Peptidase_M48	137	288	1.20E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.464
SRR1783600	control	7.976
SRR1783602	moderate drought stress	10.531
SRR1811619	moderate drought stress	10.076

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.979
DRR006520	Root Summer glycyrrhizin high producing strain	11.060
DRR006521	Root Winter glycyrrhizin high producing strain	6.536
DRR006522	Root Winter glycyrrhizin high producing strain	6.302
DRR006523	Root Summer glycyrrhizin low producing strain	11.536
DRR006524	Root Summer glycyrrhizin low producing strain	12.340
DRR006525	Leaf Summer glycyrrhizin high producing strain	60.759
DRR006526	Leaf Summer glycyrrhizin high producing strain	60.512

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.530
SRR2868004	Drought Stress (root)	11.881
SRR2967015	Control (root)	10.232

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	115.775
SRR9715740	Leaf	202.528
SRR9715741	Leaf	117.409
SRR9715739	Root	11.497
SRR9715742	Root	13.781
SRR9715743	Root	12.695

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.824
SRR8749028	MeJA induced 9h	5.803
SRR8749029	MeJA induced 9h	4.943
SRR8749030	Uninduced	3.194
SRR8749031	Uninduced	2.860
SRR8749032	Uninduced	2.655

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.226
SRR8400027	Control - Root	17.698