Gene detail information of Glyur002589s00034653.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G04030.3 | 1.00E-89 | Homeodomain-like superfamily protein |
| NR | XP_006574748.1 | 0 | PREDICTED: uncharacterized protein LOC100786282 isoform X2 [Glycine max] |
| Swissprot | tr|Q9SAK5|APL_ARATH | 6.00E-54 | Myb family transcription factor APL |
| trEMBL | tr|K7MHH9|K7MHH9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G26820.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02589 | 25598 | 29484 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | G2-like |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002589s00034653.1 | PF00249.26 | Myb_DNA-binding | 43 | 94 | 1.50E-17 |
| Glyur002589s00034653.1 | PF14379.1 | Myb_CC_LHEQLE | 143 | 190 | 4.90E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.436 |
| SRR1783600 | control | 7.324 |
| SRR1783602 | moderate drought stress | 5.043 |
| SRR1811619 | moderate drought stress | 5.215 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.749 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.086 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.493 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.482 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.237 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.052 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.408 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.428 |
| SRR2868004 | Drought Stress (root) | 10.166 |
| SRR2967015 | Control (root) | 13.743 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.701 |
| SRR9715740 | Leaf | 12.350 |
| SRR9715741 | Leaf | 8.827 |
| SRR9715739 | Root | 0.140 |
| SRR9715742 | Root | 4.924 |
| SRR9715743 | Root | 4.705 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.969 |
| SRR8400027 | Control - Root | 7.533 |