Gene detail information of Glyur002589s00034647.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G61430.1 | 2.00E-56 | NAC domain containing protein 100 |
| NR | XP_007151811.1 | 3.62E-90 | hypothetical protein PHAVU_004G076900g [Phaseolus vulgaris] |
| Swissprot | tr|Q9FLJ2|NC100_ARATH | 1.00E-71 | NAC domain-containing protein 100 |
| trEMBL | tr|V7C3D4|V7C3D4_PHAVU | 1.00E-90 | Uncharacterized protein {ECO:0000313|EMBL:ESW23805.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02589 | 2082 | 3774 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NAC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002589s00034647.1 | PF02365.10 | NAM | 1 | 116 | 2.10E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.077 |
| SRR1783600 | control | 9.746 |
| SRR1783602 | moderate drought stress | 15.163 |
| SRR1811619 | moderate drought stress | 16.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.334 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.195 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.777 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.610 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.750 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.698 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.641 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.892 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.687 |
| SRR2868004 | Drought Stress (root) | 15.222 |
| SRR2967015 | Control (root) | 16.237 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.463 |
| SRR9715740 | Leaf | 1.850 |
| SRR9715741 | Leaf | 2.061 |
| SRR9715739 | Root | 1.631 |
| SRR9715742 | Root | 25.201 |
| SRR9715743 | Root | 21.412 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 98.734 |
| SRR8749028 | MeJA induced 9h | 249.123 |
| SRR8749029 | MeJA induced 9h | 193.994 |
| SRR8749030 | Uninduced | 119.388 |
| SRR8749031 | Uninduced | 220.358 |
| SRR8749032 | Uninduced | 79.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.615 |
| SRR8400027 | Control - Root | 18.410 |