Gene detail

Gene detail information of Glyur002583s00034706

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G45775.2	3.00E-89	Ribosomal L5P family protein
NR	XP_008225318.1	1.11E-128	PREDICTED: 60S ribosomal protein L11 [Prunus mume]
COG	YP_003435583.1	3.00E-51	50S ribosomal protein L5 [Ferroglobus placidus DSM 10642]
Swissprot	tr\|P46287\|RL11_MEDSA	3.00E-130	60S ribosomal protein L11
trEMBL	tr\|A0A067FB73\|A0A067FB73_CITSI	7.00E-129	Uncharacterized protein {ECO:0000313\|EMBL:KDO63410.1}

Sequence

Transcript Sequence

>Glyur002583s00034706.1
ACCTCCCTCACTCACCCCTTCAATATTAGTTAGTACCTCACTCTGCTGCCGCAACCGCGCCTCTCTTCGCCTCTCTGTTTCTCACTGTGACTCTCTGTGGAATTCCAAATCCAATTCCAAATGGCTTCGGAGAAGAAACTGTCGAATCCGATGAGGGAGATCAAAGTGCAGAAGCTTGTCCTCAACATCTCCGTCGGTGAAAGCGGAGATCGTCTCACCAGAGCCGCCAAGGTCCTCGAACAGCTTAGTGGACAAACTCCTGTTTTCTCCAAAGCTAGATACACTGTCCGTTCCTTTGGTATCAGAAGGAATGAGAAGATTGCTTGCTATGTCACTGTTAGGGGCGACAAGGCAATGCAGCTTTTGGAGAGCGGTTTGAAGGTGAAGGAATATGAACTGCTGAGGAGGAATTTCAGTGATACCGGGTGTTTTGGCTTCGGCATTCAGGAGCATATTGATTTGGGAATCAAGTATGATCCTTCTACTGGTATTTATGGAATGGATTTCTATGTTGTCTTGGAGCGCCCTGGTTATCGTGTGGGACGTCGTCGCCGGTGCAAGGCTCGTGTTGGAATCCAGCACCGCGTCACAAAGGAGGATGCCATGAAGTGGTTCCAAGTTAAATATGAAGGTGTGATCCTAAACAAGTCCCAGAACATTGTTTAGATCAGACTATTTCTCAAGTGCTAGTTCTGAATTTTGTTGATTGTAGTTTGATGTTTCTTGAATTAGTAGCTTAAATTTCTGCGTTGGTATGAATATTACTTTTACAGTTTATGTAAGCTTTTTGTTGACTTTTCCACCCGAATATCATTAAATTTTGATATCCATATTGACACCTTGCTGATGTTACTGAAATTGTATTACATTTTGTTTGCATTTATCTATTTACCCGCTTGCCAGAAATCACTACATTGATAACGAACTAAAAGGTAAAAATTAGAGTAAACCACCGAATTCGTTGACGAGAGATTTAGTGGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02583	28985	31680	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002583s00034706.1	PF00281.14	Ribosomal_L5	9	62	2.50E-21
Glyur002583s00034706.1	PF00673.16	Ribosomal_L5_C	66	165	3.80E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	183.100
SRR1783600	control	187.119
SRR1783602	moderate drought stress	148.829
SRR1811619	moderate drought stress	149.780

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	252.879
DRR006520	Root Summer glycyrrhizin high producing strain	250.254
DRR006521	Root Winter glycyrrhizin high producing strain	187.855
DRR006522	Root Winter glycyrrhizin high producing strain	183.817
DRR006523	Root Summer glycyrrhizin low producing strain	148.659
DRR006524	Root Summer glycyrrhizin low producing strain	149.475
DRR006525	Leaf Summer glycyrrhizin high producing strain	68.403
DRR006526	Leaf Summer glycyrrhizin high producing strain	68.235

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	396.868
SRR2868004	Drought Stress (root)	275.456
SRR2967015	Control (root)	274.206

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	127.000
SRR9715740	Leaf	103.492
SRR9715741	Leaf	112.627
SRR9715739	Root	211.653
SRR9715742	Root	169.868
SRR9715743	Root	175.040

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	549.204
SRR8749028	MeJA induced 9h	217.904
SRR8749029	MeJA induced 9h	374.479
SRR8749030	Uninduced	66.769
SRR8749031	Uninduced	48.782
SRR8749032	Uninduced	108.119

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	278.392
SRR8400027	Control - Root	245.618