Gene detail information of Glyur002583s00034703 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G04890.1 | 5.00E-20 | HSP20-like chaperones superfamily protein |
| NR | XP_003598135.1 | 4.37E-120 | 17.6 kDa class I heat shock protein [Medicago truncatula] |
| Swissprot | tr|Q9M670|RTM2_ARATH | 5.00E-22 | Protein RESTRICTED TEV MOVEMENT 2 |
| trEMBL | tr|G7IVB3|G7IVB3_MEDTR | 2.00E-120 | Hsp20/alpha crystallin family protein {ECO:0000313|EMBL:AES68386.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02583 | 15489 | 20947 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002583s00034703.1 | PF00011.16 | HSP20 | 31 | 116 | 4.90E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.002 |
| SRR1783600 | control | 0.944 |
| SRR1783602 | moderate drought stress | 1.374 |
| SRR1811619 | moderate drought stress | 1.394 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.004 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.925 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.072 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.896 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.971 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.980 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.361 |
| SRR2868004 | Drought Stress (root) | 8.897 |
| SRR2967015 | Control (root) | 8.414 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.431 |
| SRR9715740 | Leaf | 0.770 |
| SRR9715741 | Leaf | 1.242 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 1.644 |
| SRR9715743 | Root | 0.743 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.108 |
| SRR8749031 | Uninduced | 0.163 |
| SRR8749032 | Uninduced | 0.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.976 |
| SRR8400027 | Control - Root | 2.489 |