Gene detail information of Glyur002583s00034701 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27290.1 | 1.00E-74 | S-locus lectin protein kinase family protein |
| NR | AES68385.2 | 0 | S-locus lectin kinase family protein [Medicago truncatula] |
| Swissprot | tr|O81832|Y4729_ARATH | 3.00E-92 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor) |
| trEMBL | tr|G7IVB2|G7IVB2_MEDTR | 0 | Serine/threonine-protein kinase {ECO:0000256|PIRNR:PIRNR000641} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02583 | 10849 | 13603 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002583s00034701.1 | PF01453.19 | B_lectin | 81 | 167 | 4.30E-13 |
| Glyur002583s00034701.1 | PF00954.15 | S_locus_glycop | 186 | 296 | 1.80E-29 |
| Glyur002583s00034701.1 | PF08276.6 | PAN_2 | 322 | 385 | 2.10E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.439 |
| SRR1783600 | control | 1.357 |
| SRR1783602 | moderate drought stress | 4.343 |
| SRR1811619 | moderate drought stress | 4.496 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.518 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.576 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.358 |
| SRR2868004 | Drought Stress (root) | 14.592 |
| SRR2967015 | Control (root) | 12.196 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.978 |
| SRR9715740 | Leaf | 4.888 |
| SRR9715741 | Leaf | 9.885 |
| SRR9715739 | Root | 0.484 |
| SRR9715742 | Root | 1.197 |
| SRR9715743 | Root | 0.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.025 |
| SRR8749028 | MeJA induced 9h | 0.482 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 1.627 |
| SRR8749031 | Uninduced | 4.828 |
| SRR8749032 | Uninduced | 0.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.175 |
| SRR8400027 | Control - Root | 5.063 |