Gene detail

Gene detail information of Glyur002578s00032750

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G23380.1	8.00E-104	KNOTTED1-like homeobox gene 6
NR	AGJ83725.1	0	Knotted-1 homeobox protein [Caragana korshinskii]
Swissprot	tr\|Q84JS6\|KNAT6_ARATH	1.00E-146	Homeobox protein knotted-1-like 6
trEMBL	tr\|R9R650\|R9R650_9FABA	0	Knotted-1 homeobox protein {ECO:0000313\|EMBL:AGJ83725.1}

Sequence

Transcript Sequence

>Glyur002578s00032750.1
CTCTGGCAGCAGAAGCAGAAGCAGAAGCAGCGAAGTTCGAGAAATTGAAGTTCGTGGTGGTGATGGAGGAAATGTACGGTGTGCCTTCGACGGCGGAGTACGCCGACAAGGCGCTGATGACGCCGGAGAATCTGATCTTTCCGGCGGACTACCACAGCTTCCTCATGTCGACATCCGCCGCCGGGCGGTTTCCAATGTTCGGATCCGACGAACTCCTCTCGGCAGAACCCTCATCAGCCGTCGCCACTCCCGCCGGAATTCAAAGGCCGGAGGAGGACAACGACNTGGCCTCCACCGTCATGAAGGCCAAAATCGCCTCTCACCCTCACTACCCTCGCCTCCTCCAAGCCTACATCGACTGCCAGAAGGTTGGGGCACCTCCTGAAATAGCGCGTTTGTTGGAGGAAATCCGGCGAGAAAATGACCTGTGTAATAAGAGTGACGTTGTTTCCAGCACGTGTTTTGGAGCCGATCCCGAACTCGACGAGTTCATGGAAACATACTGTGACATGCTGGTGAAGTATAAATCAGACCTGGCTCGTCCTTTTGACGAAGCAACCACCTTCCTCAACAAGATCGAAACACAACTAAGCCATCTCTGCACCGGTGCTTCAGTTACCACCCTTTCTGATGATGGGGGTGTATCTTCGGACGAAGATCTTAGTAACGGGGATGGAGATGCTCAAGATGGACAATCAAGGGGAGAAGATCGTGAGCTCAAGGATAGGCTCTTGCGCAAGTTTGGGAGTCACATTGGTTCTTTGAAATTGGAGTTCTCAAAGAAGAAAAAGAAGGGTAAGCTTCCTAAGGAAGCAAGACAAACACTGCTTCAGTGGTGGAATGTTCACTACAAATGGCCTTACCCAACGGAAGCTGATAAGATTGAACTGGCCAAGTCAACAGGGCTGGACCAGAAGCAAATTAANAATTGGTTTATTAATCAAAGAAAACGTCATTGGAAACCATCTGAGAATATGCAGTTTTCTATGATGGAAAATTTGACCGGACGGTTCCTTGCTGATCAATGAGGTGCATAATGTCATGGCATCATCAAATGTATATCCTNAGTTATTATTGCTGGTATTTTCTTTTGTAAATTTCTAAGTTAAAAGCAGATTACTGACAGTGAAATGCTTATTTTTCCCACAAAGAGAAAGGGAAATATTGATCATAGTAATTTGCGTCACTTGTATTCAACTACTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02578	21949	29658	-

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002578s00032750.1	PF03790.8	KNOX1	79	121	1.60E-24
Glyur002578s00032750.1	PF03791.8	KNOX2	131	180	1.60E-27
Glyur002578s00032750.1	PF03789.8	ELK	218	239	3.90E-08
Glyur002578s00032750.1	PF05920.6	Homeobox_KN	258	297	7.60E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.479
SRR1783600	control	3.660
SRR1783602	moderate drought stress	7.108
SRR1811619	moderate drought stress	6.962

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.452
DRR006520	Root Summer glycyrrhizin high producing strain	6.196
DRR006521	Root Winter glycyrrhizin high producing strain	1.270
DRR006522	Root Winter glycyrrhizin high producing strain	1.212
DRR006523	Root Summer glycyrrhizin low producing strain	1.336
DRR006524	Root Summer glycyrrhizin low producing strain	1.452
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.076
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.071

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.279
SRR2868004	Drought Stress (root)	8.497
SRR2967015	Control (root)	10.732

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	8.995
SRR9715742	Root	14.605
SRR9715743	Root	12.538

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.250
SRR8749028	MeJA induced 9h	3.281
SRR8749029	MeJA induced 9h	2.909
SRR8749030	Uninduced	0.570
SRR8749031	Uninduced	0.025
SRR8749032	Uninduced	0.871

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.303
SRR8400027	Control - Root	23.184