Gene detail information of Glyur002577s00039893 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G52970.1 | 1.00E-49 | thylakoid lumen 15.0 kDa protein |
| NR | XP_004497532.1 | 8.30E-77 | PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic-like [Cicer arietinum] |
| COG | YP_007128759.1 | 6.00E-20 | hypothetical protein Glo7428_3112 [Gloeocapsa sp. PCC 7428] |
| Swissprot | tr|Q9LVV5|TL15B_ARATH | 4.00E-61 | Thylakoid lumenal 15.0 kDa protein 2, chloroplastic (Precursor) |
| trEMBL | tr|A0A072VL83|A0A072VL83_MEDTR | 6.00E-77 | Thylakoid lumenal 15.0 kDa protein {ECO:0000313|EMBL:KEH42203.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02577 | 23141 | 25552 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 37.294 |
| SRR1783600 | control | 37.986 |
| SRR1783602 | moderate drought stress | 28.646 |
| SRR1811619 | moderate drought stress | 27.558 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 36.649 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 38.103 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 63.079 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 60.959 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 48.466 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 49.494 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 89.226 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 91.686 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.373 |
| SRR2868004 | Drought Stress (root) | 20.560 |
| SRR2967015 | Control (root) | 19.226 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 57.536 |
| SRR9715740 | Leaf | 109.070 |
| SRR9715741 | Leaf | 50.778 |
| SRR9715739 | Root | 16.877 |
| SRR9715742 | Root | 22.500 |
| SRR9715743 | Root | 25.607 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.962 |
| SRR8749028 | MeJA induced 9h | 22.806 |
| SRR8749029 | MeJA induced 9h | 28.516 |
| SRR8749030 | Uninduced | 18.643 |
| SRR8749031 | Uninduced | 9.905 |
| SRR8749032 | Uninduced | 14.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.522 |
| SRR8400027 | Control - Root | 31.181 |