Gene detail

Gene detail information of Glyur002577s00039891

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G34340.1	1.00E-54	TBP-associated factor 8
NR	XP_004496659.1	6.33E-152	PREDICTED: uncharacterized protein LOC101497943 [Cicer arietinum]
Swissprot	tr\|Q9SYZ9\|TAF8_ARATH	1.00E-85	Transcription initiation factor TFIID subunit 8
trEMBL	tr\|A0A072VQR3\|A0A072VQR3_MEDTR	3.00E-149	Transcription initiation factor TFIID subunit-like protein {ECO:0000313\|EMBL:KEH43768.1}

Sequence

Transcript Sequence

>Glyur002577s00039891.1
ATGAGCAATGGAGTAAGAGTTGCCGCCGACGAATTCGGCAGAGCCACGGCTAAGATNGCGGTGGCGCAGCTATGCGACGCGGTGGGGTTTCACTGTGTCAAGGACTCGGCACTGGAATCCTTCACCGNCCTTGCAATAAAGTACCTTGTTGACTTAGGTAGAACCGCGGAGTTTCACGCTAACCTCGCCGGAAGATCTCAATGCAGCGTGTTCGATTTGATTCTAGCATTAGAGGATTTGGAAGCACCTCGAGGGTTTTCCTCCAATGGTGGTGGTGTGAGGGAGATTATGAATTACGTCGAATCGGCGCCGGAGATACCGTTTGCTCAACCGATTCCGCAGTTTCCGGTGATTCGGGAAATGAGAATCATCCCGAGTTTCACACAAATTGGTGAGACGCCACCGGCAAAGCATATACCTCATTGGTTACCAGCATTACCCGATCCTCACACTTACATTCACACNCCCATGTGGGATGAGAGGGTCTCTGATCCTCGTGATGATAAAATTGAACAGGCTAGGCAGCGAAGGAAGGCCGAAAGGTCGTTGTTGAGTTTGCAGAAGCGGCTATTGTTGTGTAACCGTAATAACCGTAATGGCTCGGTAGAAACAAGTACTACTACAACTACTACTATTACTCCTGCTACTACTACTACTACTACTTCAGCTGTACCAGCCCCAGTAGTAATTACTACTACTGGGGTTGGTTCGGATCCTGAAGGGGTTGATAAAGATGTTTCTCCAATTGACTTGCCTTCTAGGCTTTCGGGGGTTCGNGGAGGAAACCGTGTTTCGGTGTTGGAGGCTTTTGCTCCTGCAATTGAGATGCTTGGGACTAGTGGTGGTTTGTGTGATGATGATGATGGGTTTGAAGGGAGAACGGTTCTCCCTGCTGCTGTGAGGCCGACTGTGCATTTCAAGTTCAGGATTGGGAAGAAGCTCATTGGGGAGTCTTTTGATGACAGACATCAGAAGAAGGATGCTTCACGAGCAGCTGCGGCTTTGGCTGCCAGAGAGGATGAGAGGGATGATAAGAAGAGGAGGGCTGAGTATATTCTCAGACAGTCTATGGAANACCCACAAGAACTCACTCTCTTGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02577	14761	15861	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002577s00039891.1	PF07524.8	Bromo_TP	11	80	4.90E-19
Glyur002577s00039891.1	PF10406.4	TAF8_C	137	186	2.30E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.139
SRR1783600	control	6.326
SRR1783602	moderate drought stress	5.550
SRR1811619	moderate drought stress	5.690

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.004
DRR006520	Root Summer glycyrrhizin high producing strain	8.804
DRR006521	Root Winter glycyrrhizin high producing strain	4.590
DRR006522	Root Winter glycyrrhizin high producing strain	3.978
DRR006523	Root Summer glycyrrhizin low producing strain	9.205
DRR006524	Root Summer glycyrrhizin low producing strain	8.480
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.932
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.327

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.311
SRR2868004	Drought Stress (root)	17.364
SRR2967015	Control (root)	18.480

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.191
SRR9715740	Leaf	9.878
SRR9715741	Leaf	11.320
SRR9715739	Root	35.750
SRR9715742	Root	16.325
SRR9715743	Root	18.052

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.879
SRR8749028	MeJA induced 9h	11.577
SRR8749029	MeJA induced 9h	8.586
SRR8749030	Uninduced	8.675
SRR8749031	Uninduced	4.215
SRR8749032	Uninduced	5.172

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.135
SRR8400027	Control - Root	8.543