Gene detail information of Glyur002567s00041134 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G17670.1 | 6.00E-160 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004510105.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g17670-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q84J71|PP161_ARATH | 0 | Pentatricopeptide repeat-containing protein At2g17670 |
| trEMBL | tr|G7LAS1|G7LAS1_MEDTR | 0 | PPR containing plant-like protein {ECO:0000313|EMBL:AET01163.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02567 | 33876 | 36157 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002567s00041134.1 | PF01535.15 | PPR | 229 | 253 | 0.1 |
| Glyur002567s00041134.1 | PF13041.1 | PPR_2 | 259 | 305 | 2.30E-07 |
| Glyur002567s00041134.1 | PF13041.1 | PPR_2 | 326 | 375 | 1.80E-16 |
| Glyur002567s00041134.1 | PF13041.1 | PPR_2 | 396 | 445 | 2.30E-18 |
| Glyur002567s00041134.1 | PF01535.15 | PPR | 470 | 492 | 0.07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.190 |
| SRR1783600 | control | 16.210 |
| SRR1783602 | moderate drought stress | 28.278 |
| SRR1811619 | moderate drought stress | 27.752 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.757 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.987 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.318 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.806 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.697 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.242 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.682 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.912 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.304 |
| SRR2868004 | Drought Stress (root) | 9.133 |
| SRR2967015 | Control (root) | 10.032 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.710 |
| SRR9715740 | Leaf | 7.037 |
| SRR9715741 | Leaf | 4.682 |
| SRR9715739 | Root | 10.938 |
| SRR9715742 | Root | 11.645 |
| SRR9715743 | Root | 13.210 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.202 |
| SRR8749028 | MeJA induced 9h | 9.001 |
| SRR8749029 | MeJA induced 9h | 5.859 |
| SRR8749030 | Uninduced | 1.335 |
| SRR8749031 | Uninduced | 1.445 |
| SRR8749032 | Uninduced | 1.739 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.498 |
| SRR8400027 | Control - Root | 10.587 |