Gene detail

Gene detail information of Glyur002567s00041132

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45040.1	3.00E-91	Matrixin family protein
NR	AET01165.2	2.82E-161	matrix metalloproteinase [Medicago truncatula]
COG	YP_006179981.1	4.00E-33	M10 family peptidase [Halobacillus halophilus DSM 2266]
Swissprot	tr\|P29136\|MEP1_SOYBN	4.00E-62	Metalloendoproteinase 1 (Precursor)
trEMBL	tr\|G7LBJ3\|G7LBJ3_MEDTR	1.00E-161	Matrix metalloproteinase {ECO:0000313\|EMBL:AET01165.2}

Sequence

Transcript Sequence

>Glyur002567s00041132.1
TGCTCCTTCACGTTCTTCTTCTTCACCCTTCTTCTTCTTCTCACATCATCATCTTCACACACTGTTTCGAAAACCACGCTACATCAAACATTAGCACCACCACGACCAGCAACCACCAAAATAGCCGTCACAGAGTACCGCAACATCCAAAGCCGCCTCAGCAACATCACGGGCTTATCACAATTCAAAAGATACCTATCTCGTTTTGGGTACCTTAACAACACTTCTACTAGTACTTTCAGTGACGAATTCGATGCCTCTTTTGAATCGGCTCTCATCAGATACCAACGAAACCTTGGACTCCAAGTCACTGGCAAGCTCGATTCCAACACANTTTCTCAAATGATCACCCCAAGATGCGAGCATTATGTGTATTTTCCGGGGAAACCACGTTGGTCACGCGAGATGCCAATGACACTAACCTATGCCCTCTCACACGACTACATGATCCATACCCTGAGACTACAACAGATAAGAGAAGCATTCCAACGCGCGTTCTCGAGGTGGGCCTCGGTTATTCCGGTGAGTTTCATCGAAGCAGAGGACTACGATTTCGCGGACATAAAGATAGGCTTCTACAGTGGTGACCATGGTGACGGCGAGCCCTTCGACGGGGTACTCGGTGTGCTGGCACATTCCTTCTCGCCGGAGATTGGGCGGCTCCACCTCGATGCGGCGGAGACGTGGGCGGTGGACTTTGGGGAAACCAAGTCGGAGGTGGCTGTTGATTTGGAGTCGGTGGCAACACATGAGATTGGGCACTTGTTGGGGTTGTCTCATAGTTCGGTTAAAGAGGCTGTTATGTATCCGAGTTTGANACCAAGGGATAAGAGAGCTGATTTGAACATTGATGACATTAAGGGAGTGCAATCTCTTTATGGTTCTAATCCTCATTATAGATCTGAGTGGTCACTTGAATCTGATATCTCTGCAAATCAAGGTGCCCCTCGGTTTGGAGTGGACCCGAATTTCAGGTTGCCTAGTACTGCTGGAATATTGATTATTATAATTACCCTCATTCTTCATCATGTTGCTATATGTACAAACAATGATAATGGCGGTTGTTATATATGGAACTTAGTTTATTCTCTATCTAAACCACACTTGGAAGATCATGATCAGAATACTGCAGTGAAGTCACTTGAAACGTCATCACCCCGAGATATATATGGTTGCAAACTCGATGGTTACCACCCAATCCACTACAAATACCGGTGGTCAGAAAAGTGTGGATTGCTGTCAAAAATGGTAATCAATCAAAGAGAAACTGAAGGATTAGGCGAACAGAGAAGGGCTTATTCCCAGCTTGATAATGCGGCTGCGCTTAAAAGAGAGCACATCCATGACCCCGGCTCTTGGTCAACAACATTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02567	8381	12834	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

cellular_component
GO:0031012 extracellular matrix

molecular_function

GO:0004222 metalloendopeptidase activity

GO:0008237 metallopeptidase activity

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002567s00041132.1	PF01471.13	PG_binding_1	59	115	1.90E-13
Glyur002567s00041132.1	PF00413.19	Peptidase_M10	132	294	1.30E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.652
SRR1783600	control	2.795
SRR1783602	moderate drought stress	0.940
SRR1811619	moderate drought stress	0.879

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.493
DRR006520	Root Summer glycyrrhizin high producing strain	5.505
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.105
DRR006524	Root Summer glycyrrhizin low producing strain	1.690
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.740
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.032

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.642
SRR2868004	Drought Stress (root)	3.016
SRR2967015	Control (root)	2.639

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.785
SRR9715740	Leaf	0.277
SRR9715741	Leaf	0.214
SRR9715739	Root	1.304
SRR9715742	Root	1.246
SRR9715743	Root	0.965

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.028
SRR8749032	Uninduced	0.042

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.948
SRR8400027	Control - Root	8.807