Gene detail information of Glyur002560s00044392 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G65480.1 | 8.00E-67 | PEBP (phosphatidylethanolamine-binding protein) family protein |
| NR | XP_007151784.1 | 1.19E-100 | hypothetical protein PHAVU_004G074700g [Phaseolus vulgaris] |
| Swissprot | tr|Q93WI9|HD3A_ORYSJ | 3.00E-87 | Protein HEADING DATE 3A |
| trEMBL | tr|V7C330|V7C330_PHAVU | 4.00E-101 | Uncharacterized protein {ECO:0000313|EMBL:ESW23778.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02560 | 23321 | 26922 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002560s00044392.1 | PF01161.15 | PBP | 29 | 164 | 1.20E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.743 |
| SRR1783600 | control | 0.661 |
| SRR1783602 | moderate drought stress | 1.119 |
| SRR1811619 | moderate drought stress | 1.113 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.586 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.321 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.629 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.324 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.529 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.266 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 35.421 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 37.016 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 92.532 |
| SRR9715740 | Leaf | 115.021 |
| SRR9715741 | Leaf | 84.353 |
| SRR9715739 | Root | 0.551 |
| SRR9715742 | Root | 2.156 |
| SRR9715743 | Root | 1.125 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.305 |
| SRR8749031 | Uninduced | 0.628 |
| SRR8749032 | Uninduced | 0.267 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.324 |
| SRR8400027 | Control - Root | 0.279 |