Gene detail

Gene detail information of Glyur002559s00041503.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G67510.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_004496523.1	0	PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830-like [Cicer arietinum]
COG	YP_002433868.1	2.00E-26	hypothetical protein Dalk_4722 [Desulfatibacillum alkenivorans AK-01]
Swissprot	tr\|Q9C9N5\|Y1668_ARATH	4.00E-162	Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 (Precursor)
trEMBL	tr\|V7AM32\|V7AM32_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW06642.1}

Sequence

Transcript Sequence

>Glyur002559s00041503.1
ATGACGGTATCTCTCTCAGGCTTCTTCGCTCTGTTTTTTCACTTTTTCTTCAGCTTTGCACTTTCTCTCTCCTCCGACGGCCTTGCCCTTCTCTCTCTAAAATCNGCCGTCGACCAACCCTCCGCCGGCGGAGCATTTTCCGACTGGAATGACGGCGATCTCACGCCGTGTGCCTGGTCGGGAATTTCCTGTGCGAACATCTCTGGCCTCCCGGAGCCGCGCGTGGTCGGGATTGCCCTTGCCGGAAAATCGCTCCGCGGGTATATCCCCTCGGAGCTCGGCAGCCTCCGGTACCTCCGCCGCCTCAACCTCCACGACAATGACTTCTACGGCGTCGTCCCGGTGCAGCTCTTTAATGCCACCGCATTACACAGCATNTTCCTCCACCGCAACAACCTCTCNGGCCCCTTCCCCGCCTCGGTCTGCACCGTTCCTCGCCTCCAAAACCTCGACCTCTCCGACAACTCTTTCTCCGGCCACATCCCCGGCGACCTCAAGAACTGCAAGCAGCTCCAGCGGCTGATCCTCGCACGGAACAAATTCTCCGGCGAGATTCCNACNGGCATTTGGCCGGAGCTAGAGAATCTCGTCCAGCTCGACCTCTCCACCAACGAGTTCCAAGGCCCAATCCCGGACGACATCGGCGACCTCACCTCCCTCTCCGGCACACTGAACCTCTCATTCAACCACCTTTCCGGCAACATCCCGAAGTCTCTTGGGAAGTTGCCCGCCACCGTGAGCTTCGACCTCCGGAACAACAACCTCAGTGGCGAGATCCCCCAGACAGGGTCATTTTCAAACCAGGGCCCAACCGCATTCCTTGGCAACCCAAACCTGTGTGGGTTTCCACTTCGAAAATCCTGCACAGGTTCAGACCGGGGCTCGGTGGGCCCCGGTTCGTCTTCACATGAAGTCGAAGCGGGTAACCGCCCAAGAGAGCCGAGCCCCAGTTTGATTATTTTGATCTCAGTGGCTGATGCCGCTGCGGTTGCTCTCATTGGGCTTGTGATTGTGTATGTTTATTGGAAGAAGAAGGATGATGCAAATGCATGTAGCTGCACTGGGAAGAGCAAGTTTGGTGGGAGTAATCATGATAATGANGGTGATGATTATAATGATGATGAGAAAGGGAAAGGGAATGTGTGTGGGTTTCCATGTATTAGTGGTATGAAGAATGAGGATGATGATGAGGTTGAGGTAGGGGTAGATGGGGGAATAGGGAAAGGGGAAGGGGAATTGGTGACAATTGATAAAGGTTTGAGGTTTGAGCTTGATGAGCTATTGAGAGCATCTGCATATGTCTTGGGGAAGAGTGTGTTGGGGATTGTGTACAAGGTGGTGTTGGGGAATGGGGTGCCAGTGGCTGTGAGGAGATTAGGGGAAGGTGGAGAAGAGAGNTACAAGGAGTTTGCTGCTGAGGTTCAAGCCATTGGGAAGGTGAAGCACCCAAACATTGTGAGGTTGAGGGCTTATTATTGGGCACATGATGAGAAGCTTCTCATTAGTGATTTCATCTCCAATGGNAACTTGGCCCAAGCCCTAAGAGGGAGAAATGGCCAACCATCTCCAAACCTTTCATGGTCAACAAGGTTGAGAATTGCCAAAGGAATAGCCAGGGGCTTGGCCTATCTACACGAATGCAGTCCCAGGAAATTTGTCCATGGTGACATCAAACCCTCCAACATCCTCCTCGACAATGACTTCCATNCCTACATCTCCGATTTCGGCCTAAACCGCCTCATCAGCATCACCGGCAACAACCCCTCCACTGGTGGCTTCATGGGTGGTGCTCTTCCATACACAAAGCCAGCACAGAAAGACAGAACAAACAANAACAACAACTACAAAGCCCCTGAAGCTCGTGTCCCTGGTTGTAGACCCAATCAGAAGTGGGACGTGTATTCCTTTGGGGTTGTTTTGCTTGAATTGCTAACTGGGAAATCACCAGAATCATCTCCAACAACATCATCATCATCATCAAGTACTTCTGTTGAAGTTCCAGCTGATTTGGTAAGGTGGGTGAGAAATGGGTTTGATCAAGAAAGCCCATTATCTGAAATGGTTGACCCNTCACTGCTACAAGAAGTGCGTGCTAAGAAAGAGGTGTTGGCTGTGTTTCATGTGGCACTTGCTTGCACTGAAGGTGACCCTGAGGTCCGGCCAAGAATGAAAACTGTTTCTGAGAATCTTGAAAGGATTGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02559	15484	20614	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002559s00041503.1	PF08263.7	LRRNT_2	24	64	6.90E-09
Glyur002559s00041503.1	PF12799.2	LRR_4	145	183	1.10E-06
Glyur002559s00041503.1	PF13516.1	LRR_6	218	241	0.49
Glyur002559s00041503.1	PF00069.20	Pkinase	435	659	2.90E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.837
SRR1783600	control	1.846
SRR1783602	moderate drought stress	0.827
SRR1811619	moderate drought stress	0.826

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.493
DRR006520	Root Summer glycyrrhizin high producing strain	1.362
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.543
DRR006524	Root Summer glycyrrhizin low producing strain	1.523
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.337
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.357

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.465
SRR2868004	Drought Stress (root)	2.864
SRR2967015	Control (root)	2.865

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.515
SRR9715740	Leaf	0.125
SRR9715741	Leaf	0.119
SRR9715739	Root	0.353
SRR9715742	Root	1.554
SRR9715743	Root	1.244

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.014
SRR8749029	MeJA induced 9h	0.014
SRR8749030	Uninduced	0.017
SRR8749031	Uninduced	0.016
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.262
SRR8400027	Control - Root	2.217