Gene detail

Gene detail information of Glyur002559s00041501

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G49400.1	4.00E-35	Nucleic acid-binding, OB-fold-like protein
NR	AES74362.2	4.53E-59	30S ribosomal S17-like protein [Medicago truncatula]
COG	YP_007314303.1	2.00E-25	30S ribosomal protein S17 [Halobacteroides halobius DSM 5150]
Swissprot	tr\|P49504\|RR17_ODOSI	1.00E-21	30S ribosomal protein S17, chloroplastic
trEMBL	tr\|G7KPZ7\|G7KPZ7_MEDTR	2.00E-59	30S ribosomal S17-like protein {ECO:0000313\|EMBL:AES74362.2}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02559	9562	11350	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002559s00041501.1	PF00366.15	Ribosomal_S17	61	128	8.40E-24
Glyur002559s00041501.2	PF00366.15	Ribosomal_S17	61	128	8.40E-24

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	99.421
SRR1783600	control	101.796
SRR1783602	moderate drought stress	156.396
SRR1811619	moderate drought stress	162.800

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	196.538
DRR006520	Root Summer glycyrrhizin high producing strain	194.870
DRR006521	Root Winter glycyrrhizin high producing strain	66.924
DRR006522	Root Winter glycyrrhizin high producing strain	66.638
DRR006523	Root Summer glycyrrhizin low producing strain	308.605
DRR006524	Root Summer glycyrrhizin low producing strain	304.980
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.844
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.989

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.713
SRR2868004	Drought Stress (root)	32.025
SRR2967015	Control (root)	33.764

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.018
SRR9715740	Leaf	40.256
SRR9715741	Leaf	34.282
SRR9715739	Root	37.671
SRR9715742	Root	37.703
SRR9715743	Root	33.019

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	58.639
SRR8749028	MeJA induced 9h	30.567
SRR8749029	MeJA induced 9h	50.171
SRR8749030	Uninduced	18.029
SRR8749031	Uninduced	14.347
SRR8749032	Uninduced	31.326

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	62.821
SRR8400027	Control - Root	49.188