Gene detail information of Glyur002557s00031653 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G22860.1 | 4.00E-65 | Cell cycle regulated microtubule associated protein |
| NR | XP_004515750.1 | 4.78E-142 | PREDICTED: protein TPX2-like isoform X3 [Cicer arietinum] |
| Swissprot | tr|F4I2H7|TPX2_ARATH | 4.00E-34 | Protein TPX2 |
| trEMBL | tr|G7JK67|G7JK67_MEDTR | 1.00E-141 | Cell cycle regulated microtubule-associated protein {ECO:0000313|EMBL:AES90979.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02557 | 33499 | 36469 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002557s00031653.1 | PF12214.3 | TPX2_importin | 29 | 195 | 1.50E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.991 |
| SRR1783600 | control | 3.116 |
| SRR1783602 | moderate drought stress | 5.171 |
| SRR1811619 | moderate drought stress | 5.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.055 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.773 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.945 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.735 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.045 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.650 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.184 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.905 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.735 |
| SRR2868004 | Drought Stress (root) | 1.754 |
| SRR2967015 | Control (root) | 1.496 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.230 |
| SRR9715740 | Leaf | 0.740 |
| SRR9715741 | Leaf | 1.527 |
| SRR9715739 | Root | 1.776 |
| SRR9715742 | Root | 2.505 |
| SRR9715743 | Root | 2.586 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.891 |
| SRR8749028 | MeJA induced 9h | 1.298 |
| SRR8749029 | MeJA induced 9h | 1.841 |
| SRR8749030 | Uninduced | 0.465 |
| SRR8749031 | Uninduced | 0.351 |
| SRR8749032 | Uninduced | 0.256 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.701 |
| SRR8400027 | Control - Root | 3.929 |