Gene detail information of Glyur002557s00031645 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G62790.2 | 6.00E-22 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| NR | AFK33893.1 | 5.40E-43 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9FFY3|VAS_ARATH | 2.00E-08 | Lipid transfer-like protein VAS (Precursor) |
| trEMBL | tr|I3S0V1|I3S0V1_LOTJA | 2.00E-43 | Uncharacterized protein {ECO:0000313|EMBL:AFK33893.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02557 | 6862 | 9856 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002557s00031645.1 | PF14368.1 | LTP_2 | 12 | 103 | 1.70E-18 |
| Glyur002557s00031645.2 | PF14368.1 | LTP_2 | 12 | 103 | 9.40E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 153.723 |
| SRR1783600 | control | 153.076 |
| SRR1783602 | moderate drought stress | 101.636 |
| SRR1811619 | moderate drought stress | 102.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 84.459 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 84.921 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 128.554 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 125.961 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 62.375 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 62.461 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 37.810 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 37.586 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 155.424 |
| SRR2868004 | Drought Stress (root) | 169.018 |
| SRR2967015 | Control (root) | 126.982 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 163.885 |
| SRR9715740 | Leaf | 82.517 |
| SRR9715741 | Leaf | 181.832 |
| SRR9715739 | Root | 73.908 |
| SRR9715742 | Root | 90.377 |
| SRR9715743 | Root | 78.258 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 306.047 |
| SRR8749028 | MeJA induced 9h | 513.869 |
| SRR8749029 | MeJA induced 9h | 449.979 |
| SRR8749030 | Uninduced | 677.797 |
| SRR8749031 | Uninduced | 420.033 |
| SRR8749032 | Uninduced | 605.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 158.295 |
| SRR8400027 | Control - Root | 167.492 |